[R-pkg-devel] [CRAN-pretest-archived] CRAN submission gwsem 2.0.3
On 13/06/2020 1:29 p.m., Joshua N Pritikin wrote:
I'm trying to include vignettes that take much too long for CRAN check.
At the beginning of the Rmarkdown vignette, I use
is_CRAN <- !identical(Sys.getenv("NOT_CRAN"), "true")
if (is_CRAN) q()
And then I use
export NOT_CRAN=true
when I build locally. But CRAN check still complains,
You shouldn't call q() from a vignette. Since you're using Rmarkdown, you can use a variable for the eval chunk option, e.g. put this in your setup chunk: knitr::opts_chunk$set(eval = !is_CRAN) Duncan Murdoch
On Mon, Jun 08, 2020 at 04:24:43PM +0200, ligges at statistik.tu-dortmund.de wrote:
Flavor: r-devel-linux-x86_64-debian-gcc
Check: re-building of vignette outputs, Result: WARNING
Error(s) in re-building vignettes:
...
--- re-building 'GeneEnvironmentInteraction.Rmd' using rmarkdown
--- re-building 'OneFactorModel.Rmd' using rmarkdown
--- re-building 'PostGWASprocessing.Rmd' using rmarkdown
--- re-building 'ResidualsModel.Rmd' using rmarkdown
--- re-building 'StandardGWAS.Rmd' using rmarkdown
--- re-building 'TwoFactorModel.Rmd' using rmarkdown
--- re-building 'UserSpecifiedGWASModels.Rmd' using rmarkdown
--- re-building 'growth.Rmd' using rmarkdown
Error: Vignette re-building failed.
Execution halted
What's the correct way to avoid CRAN complaints?