[R-pkg-devel] DLL requires the use of native symbols
Thank you so much - Ivan! I think that I need to update R to the latest version then. Have a great day! Best, Aixiang
From: Ivan Krylov <krylov.r00t at gmail.com>
Sent: Tuesday, October 31, 2023 1:36 AM
To: Aixiang Jiang
Cc: List r-package-devel; Simon Urbanek
Subject: Re: [R-pkg-devel] DLL requires the use of native symbols
Sent: Tuesday, October 31, 2023 1:36 AM
To: Aixiang Jiang
Cc: List r-package-devel; Simon Urbanek
Subject: Re: [R-pkg-devel] DLL requires the use of native symbols
This email came from an EXTERNAL SENDER. If you think this message is suspicious, please do not open any attached files or links, and forward it as an attachment to spammail at bccrc.ca Dear Simon, Could you please look into this? The machines running r-release-macos-* checks seem to have MassSpecWavelet < 1.66 installed instead of the current version, 1.68. I think that MassSpecWavelet >= 1.66 would be version-appropriate for R-4.3 (Bioconductor >= 3.17). On Tue, 31 Oct 2023 07:31:12 +0000 Aixiang Jiang <aijiang at bccrc.ca> wrote: > 'DLL requires the use of native symbols' Interesting. It's not you, it's the MassSpecWavelet package, but the error has already been fixed there. Look at the traceback produced for the error: >> Error in localMaximumSlidingWindow(x, winSize) : >> DLL requires the use of native symbols >> Calls: MPC_DANM ... getLocalMaximumCWT -> localMaximum -> >> localMaximumSlidingWindow The error happens in a function called 'localMaximumSlidingWindow', called from 'localMaximum', called from 'getLocalMaximumCWT'. 'getLocalMaximumCWT' belongs to the MassSpecWavelet package. The problem is that the maintainer sets R_forceSymbols(info, TRUE) but then uses .Call() with a string containing the name of the function instead of a special object that directly refers to that function. The fix for that has been committed half a year ago <https://code.bioconductor.org/browse/MassSpecWavelet/commit/496de2969b2f43f8be00f1966611497fa3053937> and became part of the 1.66.0 release and the following versions of the package. The fixed package versions went into Bioconductor 3.17 (for R-4.3) but not 3.16 (for R-4.2). -- Best regards, Ivan