[R-pkg-devel] Ubuntu Linux: Package suggested but not available
I think this means that the ucminf package was not installed properly. There is probably something about it in the log.... G. On Thu, Feb 7, 2019 at 5:15 PM Goldfeld, Keith
<Keith.Goldfeld at nyulangone.org> wrote:
I did just take a look at the log, which may provide some insight, though not to me.
This is the key part of the message where things go awry:
#> Error in dyn.load(file, DLLpath = DLLpath, ...) :
#> unable to load shared object '/home/docker/R/ucminf/libs/ucminf.so':
#> : cannot open shared object file: No such file or directory
#> ERROR: lazy loading failed for package ?ordinal?
Does this pinpoint the problem? If so, what can I do about it?
And here is the full log from the attempt to install ordinal.
#> * installing *source* package ?ordinal? ...
#> ** package ?ordinal? successfully unpacked and MD5 sums checked
#> ** libs
#> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c get_fitted.c -o get_fitted.o
#> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
#> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c links.c -o links.o
#> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utilityFuns.c -o utilityFuns.o
#> g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ordinal.so get_fitted.o init.o links.o utilityFuns.o -L/usr/lib/R/lib -lR
#> installing to /home/docker/R/ordinal/libs
#> ** R
#> ** data
#> *** moving datasets to lazyload DB
#> ** inst
#> ** byte-compile and prepare package for lazy loading
#> Error in dyn.load(file, DLLpath = DLLpath, ...) :
#> unable to load shared object '/home/docker/R/ucminf/libs/ucminf.so':
#> libRblas.so: cannot open shared object file: No such file or directory
#> ERROR: lazy loading failed for package ?ordinal?
#> * removing ?/home/docker/R/ordinal?
?On 2/7/19, 11:56 AM, "G?bor Cs?rdi" <csardi.gabor at gmail.com> wrote:
You probably have an error earlier in the R-hub build log that
explains why ordinal failed to install.
Gabor
On Thu, Feb 7, 2019 at 4:44 PM Goldfeld, Keith
<Keith.Goldfeld at nyulangone.org> wrote:
>
> I am using devtools::check_rhub() before submitting a new version of my package simstudy to CRAN. I am getting an error message about a package I use in the vignette from the Ubuntu Linux platform:
>
> * checking package dependencies ... ERROR
> Package suggested but not available: ?ordinal?
>
> The suggested packages are required for a complete check.
> Checking can be attempted without them by setting the environment
> variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
>
>
> This is not an issue for any of the other platforms. Any thoughts about how I can address this?
>
> Thanks - Keith
>
>
>
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