[R-pkg-devel] ERROR from R CMD check that I have never seen before
followup. I backed up to R-3.1.2 and fixed the problems it found. Then I tried again with R-3.2.0 and I am still getting these messages Error in validObject(.Object) : invalid class "ObjectsWithPackage" object: superclass "atomicVector" not defined in the environment of the object's class Calls: <Anonymous> ... metaNameUndo -> new -> initialize -> initialize -> validObject Execution halted
On Fri, May 22, 2015 at 8:08 PM, Richard M. Heiberger <rmh at temple.edu> wrote:
I am updating the HH package and have series of messages that I don't recognize. bash-3.2$ R CMD check HH2 * using log directory '/Users/rmh/WindowsC/HOME/rmh/HH-R.package/HH2.Rcheck' * using R Under development (unstable) (2015-02-12 r67812) * using platform: x86_64-apple-darwin13.4.0 (64-bit) * using session charset: ASCII * checking for file 'HH2/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HH' version '3.1-17' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .DS_Store inst/.DS_Store These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'HH' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Error in validObject(.Object) : invalid class "ObjectsWithPackage" object: superclass "atomicVector" not defined in the environment of the object's class Execution halted I have two questions about it. 1. What is it checking? There are no words in the message that indicate which of my functions is being looked at. I am getting 6 of these. They are all identically worded. sometimes they are NOTE ERROR WARNING Thanks Rich 2. How can I run R CMD check, or its components, in a way that will stop and let me investigate from the point? I am looking for the equivalent of the R option option(error=recover)