[R-pkg-devel] Package Rejection Error Help
Andrew, I think if you want to include a Bioconductor dependency, then I think you add the "biocViews:" line to your description file to enable bioconductor package installation. See this answer on Bioinformatics stackexchange: https://bioinformatics.stackexchange.com/a/3375/51 Hope that helps! -Robert
On Tue, Apr 6, 2021 at 1:14 PM Andrew Dhawan <adhawan at qmed.ca> wrote:
Thank you both very kindly - I have addressed both notes. I am still wondering though about the RankProd dependency error - any insight into this? Thanks! Andrew On Tue, Apr 6, 2021 at 11:58 AM Uwe Ligges < ligges at statistik.tu-dortmund.de> wrote:
On 06.04.2021 17:39, Patrick Giraudoux wrote:
I had a similar problem with intepreting "notes" in pgirmess checks. Some are lethal and lead to rejection and some not (just informative comments). Fortunately Uwe has been kind enough to tell me what I
missed
(I thought that all notes were just "informative"). Would it be possible to call lethal notes "errors" to keep us aware
that
we must really do something with them and fix what is actually a
problem?
These are Notes as it may not be a serious issue or may be a false positive, nevertheless, we like to get clean packages to CRAN. WARNINGs and ERRORs will never be accepted. The policies clearly say that significant Notes have to be addressed. The only Note that is always acceptable is the CRAN maintainer Note about the package maintainer's address. All other Notes should be fixed generally or need manual attention in case of the really very few exceptions. Best, Uwe Ligges
Best, Patrick Le 06/04/2021 ? 17:33, Uwe Ligges a ?crit :
Two Notes: Found the following (possibly) invalid URLs: URL: http://imagemagick.org/script/download.php (moved to https://imagemagick.org/script/download.php) From: inst/doc/vignette.html Status: 200 Message: OK Please change http --> https, add trailing slashes, or follow moved content as appropriate. * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory Simply omit the field if you have no data. Best, Uwe Ligges On 06.04.2021 16:27, Andrew Dhawan wrote:
Dear all, I am a bit puzzled by this error for the sigQC package being uploaded
to
CRAN. Checks on my end pass without issue. There is one error regarding the bioConductor dependency RankProd that comes up only on the Debian OS when checking. See here for further details:
I am not sure how to resolve this - it seems to me that the
dependency
*should* be available across platforms, and short of removing the dependency (which we rely on a fair bit), I'm not sure what we can
do.
Any thoughts or suggestions would be massively appreciated.
Thank you so kindly!
Andrew
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