On Apr 9, 2021, at 12:14 AM, Jeff Newmiller <jdnewmil at dcn.davis.ca.us> wrote:
Maybe use r.rsp?
https://blog.r-hub.io/2020/06/03/vignettes/
How to include my pre-print / cheatsheet as a PDF vignette?
On April 8, 2021 12:39:20 PM PDT, "Dr. Connie Brett" <connie at aggregate-genius.com> wrote:
Hello,
I have a package (DGEobj) that depends on the Ensembl service to look
up information used to build the vignette. My builds work fine on
Travis, locally and on R-hub. Occasionally I have seen blips with
regard to internet-based resources not being available, and my vignette
depends on a number of internet resources to get example datasets.
However when I submitted my package to CRAN today the failures Windows
and Debian were that the server certificate verification failed ( SSL
certificate problem: unable to get local issuer certificate).
I?m not sure if there is something I can do about this or if this is
considered a "false positive" per the email - it seems like a "wait and
retry" issue. I don?t want to be rude uploading the package again
without a change or erroneously emailing in response to the rejection.
How should this be handled properly now and into the future? It isn?t
feasible to not use Ensembl for this vignette.
Thanks for your insight and feedback!
Flavor: r-devel-windows-ix86+x86_64
Check: re-building of vignette outputs, Result: WARNING
Error(s) in re-building vignettes:
--- re-building 'DGEobj_Overview.Rmd' using rmarkdown
Ensembl site unresponsive, trying asia mirror
Quitting from lines 259-280 (DGEobj_Overview.Rmd)
Error: processing vignette 'DGEobj_Overview.Rmd' failed with
diagnostics:
SSL certificate problem: unable to get local issuer certificate
--- failed re-building 'DGEobj_Overview.Rmd'
SUMMARY: processing the following file failed:
'DGEobj_Overview.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Check: re-building of vignette outputs, Result: WARNING
Error(s) in re-building vignettes:
--- re-building 'DGEobj_Overview.Rmd' using rmarkdown
Ensembl site unresponsive, trying asia mirror
Quitting from lines 235-256 (DGEobj_Overview.Rmd)
Error: processing vignette 'DGEobj_Overview.Rmd' failed with
diagnostics:
server certificate verification failed. CAfile: none CRLfile: none
--- failed re-building 'DGEobj_Overview.Rmd'
SUMMARY: processing the following file failed:
'DGEobj_Overview.Rmd'
Error: Vignette re-building failed.
Execution halted
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