Message-ID: <etPan.5c76b41a.5bcf8b48.1295e@bdi.ox.ac.uk>
Date: 2019-02-27T16:00:26Z
From: Matthew Hall
Subject: [R-pkg-devel] Bioconductor dependencies => Windows checks failed
In-Reply-To: <MN2PR05MB6496AA5234A4A401AC6F48E3F9740@MN2PR05MB6496.namprd05.prod.outlook.com>
Sure, sorry.
http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00check.log
http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00install.out
(the typo in the title is obviously gone)
On 27 February 2019 at 14:42:23, Martin Morgan (mtmorgan.bioc at gmail.com<mailto:mtmorgan.bioc at gmail.com>) wrote:
Bioconductor 3.8 is the current release version of Bioconductor, and should be used by CRAN for current release versions of R. This seems perhaps like a stale installation on the Windows machine.
A link to the actual check report would be helpful.
Martin
?On 2/27/19, 9:25 AM, "R-package-devel on behalf of Matthew Hall" <r-package-devel-bounces at r-project.org on behalf of matthew.hall at bdi.ox.ac.uk> wrote:
Hello,
I?ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error:
Error: object 'as_data_frame' is not exported by 'namespace:tidytree'
The official ggtree developer solution to this known issue is to upgrade to Bioconductor 3.8, so I?m guessing the version used in the check is earlier? Is there anything I can do?
Thanks, Matthew
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