[R-pkg-devel] Warning: rBind is deprecated-- but I don't call it

Thanks. I had suspected another package, but couldn?t figure out how to
show that.

debug(Matrix::rBind)  shows that the problem is in lme4
#with
 debug(Matrix::rBind)

x.df <- structure(list(values = c(9, 6, 8, 7, 10, 6, 2, 1, 4, 1, 5, 2,
5, 3, 6, 2, 6, 4, 8, 2, 8, 6, 9, 7), items = structure(c(1L,
1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L,
3L, 4L, 4L, 4L, 4L, 4L, 4L), class = "factor", .Label = c("J1",
"J2", "J3", "J4")), id = structure(c(1L, 2L, 3L, 4L, 5L, 6L,
1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L,
5L, 6L), .Label = c("S1", "S2", "S3", "S4", "S5", "S6"), class =
"factor")), row.names = c(NA,
-24L), class = "data.frame")

mod.lmer <- lme4::lmer(values ~ 1 + (1 | id) + +(1 | items),
    data = x.df, na.action = na.omit)

#it calls rBind and then throws the warning which win.builder then calls
and error.

Now, I will work on how to get around this (not use lmer?)  but at least
now I know the problem.

Bill

On Mar 21, 2018, at 2:04 PM, Joris Meys <jorismeys at gmail.com> wrote:

I suspect it is used in a function from another package then. The

devtools function run_examples() allows you to run the examples separately
so you can find the culprit easier. Function check_failures() extracts info
from the check logs. Could be helpful too.

Cheers
Joris

On Wed, 21 Mar 2018, 19:49 Alexandre Courtiol, <

alexandre.courtiol at gmail.com> wrote:

Hi William,
Perhaps you use rBind indirectly...
I don't know the best way to check that, but I would try to set a
debug(rBind) before running some of your code in an interactive session.
If any function uses rBind, you should notice as it will launch the
debugger.
Better ideas are welcome.
++

Alex

On 21 March 2018 at 19:36, William Revelle <lists at revelle.net> wrote:

Dear friends,

When testing my latest version of psych on win.builder, I keep getting

the

following Warning:

* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [32s] WARNING
Found the following significant warnings:

  Warning: 'rBind' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
** running examples for arch 'x64' ... [39s] WARNING
Found the following significant warnings:

  Warning: 'rBind' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking for unstated dependencies in vignettes ... OK

I know that rBind is deprecated, but I don?t call it.


I have searched my code and as far as I can tell, I do not use rBind

(nor

cBind).   Nor do any of my examples.

Any help would be appreciated.

Thanks.

Bill


William Revelle            personality-project.org/revelle.html
Professor                                 personality-project.org
Department of Psychology www.wcas.northwestern.edu/psych/
Northwestern University    www.northwestern.edu/
Use R for psychology         personality-project.org/r
It is 2   minutes to midnight   www.thebulletin.org

--
Alexandre Courtiol

http://sites.google.com/site/alexandrecourtiol/home

*"Science is the belief in the ignorance of experts"*, R. Feynman

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William Revelle            personality-project.org/revelle.html
Professor                                 personality-project.org
Department of Psychology www.wcas.northwestern.edu/psych/
Northwestern University    www.northwestern.edu/
Use R for psychology         personality-project.org/r
It is 2 1/2  minutes to midnight   www.thebulletin.org