[R-pkg-devel] Making adjustments to the R CMD check/install commands

Thank you, Kevin!

I put together the Makevars file:
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS)
FC=c:/progra~1/PGICE/win64/18.4/bin/pgf90
SAFE_FFLAGS="-Lc:/progra~1/PGICE/win64/18.4/lib/pgf90.dll
-Lc:/progra~1/PGICE/win64/18.4/lib/pgc14.dll"



rmpiFort.obj: rmpiFort.f90
        $(FC) $(SAFE_FFLAGS) -Mmpi=msmpi -c rmpiFort.f90 -o rmpiFort.obj
rmpiFort.dll: rmpiFort.obj
        $(FC) $(SAFE_FFLAGS) rmpiFort.obj -Mmpi=msmpi -Mmakedll -o
rmpiFort.dll

But when I run R CMD check, the 00install file shows that the gfortran
compile is used, rather than the PGI compiler:
* installing *source* package 'rmpiFort' ...^M
** libs^M
^M
*** arch - i386^M
C:/progra~1/R/R-35~1.1/share/make/winshlib.mk:13: warning: overriding
commands for target `rmpiFort.dll'
Makevars:10: warning: ignoring old commands for target `rmpiFort.dll'
c:/Rtools/mingw_32/bin/gfortran  -O2 -msse2 -mfpmath=sse -Mmpi=msmpi -c
rmpiFort.f90 -o rmpiFort.obj
gfortran.exe: error: unrecognized command line option '-Mmpi=msmpi'^M
make: *** [rmpiFort.obj] Error 1
ERROR: compilation failed for package 'rmpiFort'^M
* removing 'C:/Users/erinm/rmpiFort.Rcheck/rmpiFort'^M
In R CMD INSTALL^M

So I'm still puzzled.

Any help much appreciated.

Sincerely,
Erin


Erin Hodgess, PhD
mailto: erinm.hodgess at gmail.com

Hi Erin,

The R extensions manual should be helpful here -- in particular, see the
sections on the 'src/Makevars' file and configuration of the Fortran
compiler:

https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Using-Makevars

In particular, in your 'src/Makevars' file, you'll likely want to set the
FC variable to choose the Fortran compiler, and FCFLAGS to choose the
appropriate compilation flags. As an example, you can see how one might set
these flags to compile code with the address sanitizer active:


https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Using-Address-Sanitizer

(Note that this example uses the user-level '~/.R/Makevars' file rather
than the package-level 'src/Makevars' file, but the crux is the same)

Hope this gets you on the right track,
Kevin

On Mon, Aug 27, 2018 at 1:15 PM Erin Hodgess <erinm.hodgess at gmail.com>
wrote:

Hello!

I'm building a package on Windows 10  which uses the PGI Fortran compiler.
I have a Makefile set up in the src directory, and when I run "make all",
the subroutines compile beautifully.

Now I want to create my package.  When I run R CMD check, naturally,
gfortran is called.  Is there a way that I can direct the check function
to
just use the make/Makefile, please?

Or am I out of luck, please?  (highly probable)

Thanks,
Erin

Erin Hodgess, PhD
mailto: erinm.hodgess at gmail.com

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