[R-pkg-devel] R Packages Never Finish Check

On 30 Sep 2016, at 18:52 , Duncan Murdoch <murdoch.duncan at gmail.com> wrote:

On 30/09/2016 12:24 PM, Ortega, Cameron wrote:

Hi,

When I attempt to run Check on any package, the "checking installed package size..." Check never finishes. This is across multiple versions of R and RStudio, with every package I have attempted to run, including packages confirmed to pass Check quickly and with no issues for others.

I have attempted to run Check using the following methods:
-Check under the Build tab of RStudio
-Running devtools::check() from the RStudio console
-Running R CMD check from the command line

Has anyone experienced Check failing to progress on any step, or have any ideas about what I should try next?

I've never seen that, and I run R CMD check a lot, and devtools::check sometimes.  So you're probably stuck debugging it yourself.

Do the usual debugging things:  simplify the process.  You're using devtools::check; see if the same thing happens in a terminal running R CMD check.  Depending on the answer to that, simplify the package down to almost nothing, and see if it still happens.

If you're lucky, it will only happen in devtools::check, and then you can see what it is doing that's different than what R CMD check does.  If they both give the same problem, you might need to dive into the R sources to see what "* checking installed package size ..." really does, and try running code like that independently.

I think she said that she tried that...

One more thing: when something "checks size" and loops forever, my suspicicion goes in the direction of the file system (link loops and such); perhaps try moving the build (or install) location? Also, our usual foe: virus checkers, could be involved.

Peter D.

Duncan Murdoch

This is my session info:
R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_3.3.1







This is a print out from the RStudio Check:
==> devtools::check()

Updating linkedata documentation
Loading linkedata
Writing NAMESPACE
Writing linkedata.Rd
Writing linke.Rd
Setting env vars ---------------------------------------------------------------
CFLAGS  : -Wall -pedantic
CXXFLAGS: -Wall -pedantic
Building linkedata -------------------------------------------------------------
"C:/PROGRA~1/R/R-33~1.1/bin/x64/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD build  \
  "C:\Users\caort\Documents\Subversion\rcode\lib\src\linkedata"  \
  --no-resave-data --no-manual

* checking for file 'C:\Users\caort\Documents\Subversion\rcode\lib\src\linkedata/DESCRIPTION' ... OK
* preparing 'linkedata':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
Removed empty directory 'linkedata/zipdta'
* looking to see if a 'data/datalist' file should be added
* building 'linkedata_0.1.0.tar.gz'

Setting env vars ---------------------------------------------------------------
_R_CHECK_CRAN_INCOMING_ : FALSE
_R_CHECK_FORCE_SUGGESTS_: FALSE
Checking linkedata -------------------------------------------------------------
"C:/PROGRA~1/R/R-33~1.1/bin/x64/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD check  \
  "C:\Users\caort\AppData\Local\Temp\Rtmp8EbYiM/linkedata_0.1.0.tar.gz"  \
  --as-cran --timings --no-manual

* using log directory 'C:/Users/caort/Documents/Subversion/rcode/lib/src/linkedata.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-manual --as-cran'
* checking for file 'linkedata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'linkedata' version '0.1.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'pvsolcalcs'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'linkedata' can be installed ... OK
* checking installed package size ...





**************************************************************************************
This e-mail and any attachments thereto may contain confidential information and/or information protected by intellectual property rights for the exclusive attention of the intended addressees named above. If you have received this transmission in error, please immediately notify the sender by return e-mail and delete this message and its attachments. Unauthorized use, copying or further full or partial distribution of this e-mail or its contents is prohibited.
**************************************************************************************

     [[alternative HTML version deleted]]

--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com