Message-ID: <325213815.42520131.1586942087995.JavaMail.zimbra@univ-fcomte.fr>
Date: 2020-04-15T09:14:48Z
From: Paul SAVARY
Subject: [R-pkg-devel] Error vignette rebuilding and package imports when re-submitting package
Hello,
I'm having trouble re-submitting a package (graph4lg).
- With r-patched_osx, vignette rebuilding fails with the following message :
checking re-building of vignette outputs ... [12s/16s] WARNING
Error(s) in re-building vignettes:
...
--- re-building ?vignette_graph4lg.Rmd? using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'vignette_graph4lg.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ?vignette_graph4lg.Rmd?
SUMMARY: processing the following file failed:
?vignette_graph4lg.Rmd?
Error: Vignette re-building failed.
Execution halted
- Besides, although I removed some unused packages from the imports in DESCRIPTION file, I still obtain this message :
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
?Imap? ?Rdpack? ?ade4? ?doBy? ?mclust?
All declared Imports should be used.
Except Rdpack which is needed to build the vignette, I removed these packages.
Finally, although I submit version 0.4.0, I receive checking errors relative to version 0.3.0.
I thank you in advance for your feedbacks.
Regards
Paul Savary
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