Message-ID: <LOYP265MB2015ABF488181FD2563C278AAEFE9@LOYP265MB2015.GBRP265.PROD.OUTLOOK.COM>
Date: 2021-08-17T13:22:55Z
From: Georgi Boshnakov
Subject: [R-pkg-devel] submitting package update failed, since old version out of date (?)
In-Reply-To: <954BC2DB-ABD7-4416-A4D8-D0C6AFFAE621@hsu-hh.de>
When the previous version has problems, you get an email listing them, followed with something like 'Did you fix them? Please Reply-All...'
Maybe you missed the last phrase?
Georgi Boshnakov
Get Outlook for Android<https://aka.ms/AAb9ysg>
________________________________
From: R-package-devel <r-package-devel-bounces at r-project.org> on behalf of Aisouda Hoshiyar <aisouda.hoshiyar at hsu-hh.de>
Sent: Tuesday, August 17, 2021 12:59:13 PM
To: r-package-devel at r-project.org <r-package-devel at r-project.org>
Subject: [R-pkg-devel] submitting package update failed, since old version out of date (?)
Hi,
submitting an update of our package ordPens failed (update version is 1.0.0), reporting the following:
Version: 1.0.0
ok
Version: 0.3-1
Check: R code for possible problems, Result: NOTE
genRidge: no visible global function definition for 'plogis'
ordGene: no visible global function definition for 'anova'
ordGene: no visible global function definition for 'lm'
ordSelect: no visible binding for global variable 'sd'
ordSmooth: no visible binding for global variable 'sd'
plot.ordPen: no visible global function definition for 'grey'
plot.ordPen: no visible global function definition for 'devAskNewPage'
plot.ordPen: no visible global function definition for 'lines'
predict.ordPen: no visible global function definition for 'plogis'
Undefined global functions or variables:
anova devAskNewPage grey lines lm plogis sd
Consider adding
importFrom("grDevices", "devAskNewPage", "grey")
importFrom("graphics", "lines")
importFrom("stats", "anova", "lm", "plogis", "sd")
to your NAMESPACE file.
Version: 0.3-1
Check: package dependencies, Result: NOTE
Package suggested but not available for checking: ?IsoGene?
https://cran.r-project.org/web/checks/check_results_ordPens.html <https://cran.r-project.org/web/checks/check_results_ordPens.html>
https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/ <https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/>
But these are exactly the new changes that we already took care of in the updated version 1.0.0
The previous version 0.3-1 is from 2015 and due to R updates, the old package won?t work any more.
That is exactly the reason for update version 1.0.0, were everything is fixed now.
Also,
- there is a NOTE about change in maintainer, which is already stated in the cran-comments.md, and the previous maintainer sent an e-main to CRAN as well
- there is a NOTE saying 'Examples with CPU (user + system) or elapsed time > 10s?
which is also stated in the cran-comments.md explaining that cross-validation examples are important for illustrating the package usage.
So is this a false positive?
Best
Aisouda
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