[R-pkg-devel] Note: no function found corresponding to methods exports for show
On 2023-10-08 5:43 pm, Mikael Jagan wrote:
Hi,
I recently submitted my first R package to CRAN, and I encountered a NOTE
during the checking process. The NOTE looks like this:
=============================================================
Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Check: whether the namespace can be loaded with stated dependencies,
Result: NOTE
Warning: no function found corresponding to methods exports from 'hmsr'
for: 'show'
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Sounds like your NAMESPACE is missing importFrom(methods, show) ... ? I'm not sure why you could not reproduce the problem locally, given that check uses _R_CHECK_CODE_USAGE_WITH_ONLY_BASE_ATTACHED_=true by default.
Reading tools:::.check_packages I see that this environment variable is not relevant to this particular test. Still, do import generic functions for which you define methods, from all packages != "base". Mikael
But it is hard to say anything without a link to the package sources ... Mikael
=============================================================
I'm seeking help to understand and address this issue. show is defined like
this:
#' Show method for class "hms".#'#' @param object - hms s4 object#'#'
@return It returns the names of the slots and the classes associated
with the#' slots in the "hms" class. It prints call details.#'#'
@export#'#' @examples
#' f <- function(x) x
#' result <- hms(fitness = f, lower = -5, upper = 5)
#' show(result)
setMethod("show", "hms", function(object) {
cat("An object of class \"hms\"\n")
cat("\nCall:\n", deparse(object at call), "\n\n", sep = "")
cat("Available slots:\n")
print(methods::slotNames(object))})
And in the NAMESPACE there is a line that looks like this:
exportMethods(show)
I was investigating if the show is defined correctly and the GA package has
a very similar method:
setMethod("show", "ga",function(object)
{ cat("An object of class \"ga\"\n")
cat("\nCall:\n", deparse(object at call), "\n\n",sep="")
cat("Available slots:\n")
print(slotNames(object))})
I could not reproduce this NOTE on my personal machine with Windows.
On Mac OS I have never experienced this NOTE.
Best regards
Wojciech Achtelik