[R-pkg-devel] Package dependency graphs of packages in development (local)
Nope: ```
meta_cache_update()
? Checking for package metadata updates ? Downloaded metadata files, 1.37 MB in 5 files. ? Updating metadata database
itdepends::dep_plot_size(".")
? Checking for package metadata updates ? Metadata download failed Error in stop(http_error(resp)) : Not Found (HTTP 404). Could not load or update metadata cache. If you think your local cache is broken, try deleting it with `meta_cache_cleanup()`, or the `$cleanup()` method.
I can download the cache manually (see above). Rainer ```
On 9 May 2019, at 13:16, G?bor Cs?rdi <csardi.gabor at gmail.com> wrote: It fails to download package metadata. Maybe your internet access is restricted? Gabor On Thu, May 9, 2019 at 12:12 PM Rainer M Krug <Rainer at krugs.de> wrote:
But I don?t get it to run. When I do
itdepends::dep_plot_size(".")
? Checking for package metadata updates ? Metadata download failed Error in stop(http_error(resp)) : Not Found (HTTP 404). Could not load or update metadata cache. If you think your local cache is broken, try deleting it with `meta_cache_cleanup()`, or the `$cleanup()` method. d> I get an error. Suggestions? Rainer On 9 May 2019, at 12:20, Rainer M Krug <Rainer at krugs.de> wrote: Thanks. This sounds like a really useful package - I?ll check it out. On 9 May 2019, at 12:15, Ma?lle SALMON <maelle.salmon at yahoo.se> wrote: Could https://github.com/jimhester/itdepends help? Ma?lle. Den torsdag 9 maj 2019 12:10:14 CEST, Rainer M Krug <Rainer at krugs.de> skrev: Thanks Gabor. This gives me an impressive long list. Is there a way to see this graphically? Parsing seems to be a long, tedious process. I want to identify packages which I should leave out to reduce the number of (indirect) dependencies. Rainer
On 9 May 2019, at 11:24, G?bor Cs?rdi <csardi.gabor at gmail.com> wrote: You can do something like this with https://github.com/r-lib/pkgdepends: pr <- pkgdepends::remotes()$new("local::.", library = tempfile()) #> ? Creating library directory: `/var/folders/59/0gkmw1yj2w7bf2dfc3jznv5w0000gn/T//Rtmpo5NL9R/filee95427c73f55` pr$solve() #> ? Checking for package metadata updates #> ? All 10 metadata files are current. #> ? Using session cached package metadata #> ? Using cached package metadata #> PKG SOLUTION, 1 refs, resolved in 1.2s, solved in 193ms ??????????????????????? #> local::. #> Dependencies: #> github: #> r-lib/crancache, r-lib/rcmdcheck #> standard: #> askpass, assertthat, backports, base64enc, bit, bit64, blob, callr, #> cli, clisymbols, cranlike, crayon, curl, DBI, debugme, desc, #> digest, evaluate, fansi, glue, gmailr, highr, hms, httr, jsonlite, #> knitr, magrittr, markdown, memoise, mime, openssl, parsedate, #> pillar, pkgbuild, pkgconfig, prettyunits, processx, progress, ps, #> R6, rappdirs, Rcpp, rematch2, remotes, rlang, rprojroot, RSQLite, #> sessioninfo, stringi, stringr, sys, tibble, utf8, whoami, withr, #> xfun, xopen, yaml tibble::as_tibble(pr$get_solution()$data) #> # A tibble: 61 x 27 #> ref type direct status package version license needscompilation priority #> <chr> <chr> <lgl> <chr> <chr> <chr> <chr> <lgl> <chr> #> 1 loca? local TRUE OK revdep? 1.0.0.? MIT + ? NA NA #> 2 askp? stan? FALSE OK askpass 1.1 NA FALSE NA #> 3 asse? stan? FALSE OK assert? 0.2.1 NA FALSE NA #> 4 back? stan? FALSE OK backpo? 1.1.4 NA FALSE NA #> 5 base? stan? FALSE OK base64? 0.1-3 NA FALSE NA #> 6 bit64 stan? FALSE OK bit64 0.9-7 NA FALSE NA #> 7 bit stan? FALSE OK bit 1.1-14 NA FALSE NA #> 8 blob stan? FALSE OK blob 1.1.1 NA FALSE NA #> 9 callr stan? FALSE OK callr 3.2.0 NA FALSE NA #> 10 cli stan? FALSE OK cli 1.1.0 NA FALSE NA #> # ? with 51 more rows, and 18 more variables: md5sum <chr>, sha256 <chr>, #> # filesize <int>, built <chr>, platform <chr>, rversion <chr>, repodir <chr>, #> # target <chr>, deps <list>, mirror <chr>, sources <list>, remote <list>, #> # error <list>, metadata <list>, extra <list>, dep_types <list>, #> # cache_status <chr>, lib_status <chr> And the `deps` column there shows the direct dependencies of the dependencies: ? pr$get_solution()$data$deps[1:2] #> [[1]] #> # A tibble: 25 x 5 #> ref type package op version #> <chr> <chr> <chr> <chr> <chr> #> 1 assertthat Imports assertthat "" "" #> 2 callr Imports callr "" "" #> 3 cli Imports cli "" "" #> 4 clisymbols Imports clisymbols "" "" #> 5 r-lib/crancache Imports crancache >= 0.0.0.9001 #> 6 crayon Imports crayon "" "" #> 7 DBI Imports DBI "" "" #> 8 desc Imports desc >= 1.1.1.9002 #> 9 glue Imports glue "" "" #> 10 gmailr Imports gmailr "" "" #> # ? with 15 more rows #> #> [[2]] #> # A tibble: 2 x 5 #> ref type package op version #> <chr> <chr> <chr> <chr> <chr> #> 1 testthat suggests testthat "" "" #> 2 sys imports sys >= 2.1 Gabor On Thu, May 9, 2019 at 8:53 AM Rainer M Krug <Rainer at krugs.de> wrote:
Hi I am quite sure, there was a recent discussion about dependency graphs of packages. I saw the post from Dirk at http://dirk.eddelbuettel.com/blog/2018/02/28/#017_dependencies but `tools::package_dependencies()` does only work on packages on CRAN. But my package is not yet on CRAN (but on GitHub and a drat repo), and I would like to look at the package dependencies BEFORE submitting to CRAN. Is there a tool which allows me to plot a dependency graph for my local package? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: 0000-0002-7490-0066 Department of Evolutionary Biology and Environmental Studies University of Z?rich Office Y34-J-74 Winterthurerstrasse 190 8075 Z?rich Switzerland Office: +41 (0)44 635 47 64 Cell: +41 (0)78 630 66 57 email: Rainer.Krug at uzh.ch Rainer at krugs.de Skype: RMkrug PGP: 0x0F52F982
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--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Orcid ID: 0000-0002-7490-0066
Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland
Office: +41 (0)44 635 47 64
Cell: +41 (0)78 630 66 57
email: Rainer.Krug at uzh.ch
Rainer at krugs.de
Skype: RMkrug
PGP: 0x0F52F982
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______________________________________________ R-package-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: 0000-0002-7490-0066 Department of Evolutionary Biology and Environmental Studies University of Z?rich Office Y34-J-74 Winterthurerstrasse 190 8075 Z?rich Switzerland Office: +41 (0)44 635 47 64 Cell: +41 (0)78 630 66 57 email: Rainer.Krug at uzh.ch Rainer at krugs.de Skype: RMkrug PGP: 0x0F52F982 -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: 0000-0002-7490-0066 Department of Evolutionary Biology and Environmental Studies University of Z?rich Office Y34-J-74 Winterthurerstrasse 190 8075 Z?rich Switzerland Office: +41 (0)44 635 47 64 Cell: +41 (0)78 630 66 57 email: Rainer.Krug at uzh.ch Rainer at krugs.de Skype: RMkrug PGP: 0x0F52F982
-- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: 0000-0002-7490-0066 Department of Evolutionary Biology and Environmental Studies University of Z?rich Office Y34-J-74 Winterthurerstrasse 190 8075 Z?rich Switzerland Office: +41 (0)44 635 47 64 Cell: +41 (0)78 630 66 57 email: Rainer.Krug at uzh.ch Rainer at krugs.de Skype: RMkrug PGP: 0x0F52F982