No, I?m sorry, I haven?t seen that and I built R 3.5.1 with OpenBLAS
recently. Does it work if you use the vanilla BLAS?
Avi
On Fri, Sep 14, 2018 at 4:14 PM Erin Hodgess <erinm.hodgess at gmail.com>
wrote:
Hi again!
I checked everything, did "make distribution" and the same thing occurred.
d:/Rtools/mingw_64/bin/ar -rucs ../SuiteSparse_config.a
SuiteSparse_config.o
D:\Rtools\mingw_64\bin\nm.exe: 'sublibs': No such file
d:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Matrix.dll
tmp.def CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o
chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o
dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o
dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o
sparseQR.o abIndex.o -LD:/erinm/R-3.5.1/bin/x64 -lRlapack
-LD:/erinm/R-3.5.1/bin/x64 -lRblas -LD:/erinm/R-3.5.1/extsoft/lib/x64
-LD:/erinm/R-3.5.1/extsoft/lib -LD:/erinm/R-3.5.1/bin/x64 -lR
CHMfactor.o:CHMfactor.c:(.text+0x3b): undefined reference to
`cholmod_copy_factor'
CHMfactor.o:CHMfactor.c:(.text+0x7b): undefined reference to
`cholmod_change_factor'
CHMfactor.o:CHMfactor.c:(.text+0x92): undefined reference to
`cholmod_factor_to_sparse'
CHMfactor.o:CHMfactor.c:(.text+0xa5): undefined reference to
`cholmod_free_factor'
CHMfactor.o:CHMfactor.c:(.text+0x18e): undefined reference to
`cholmod_solve'
CHMfactor.o:CHMfactor.c:(.text+0x267): undefined reference to
`cholmod_copy_factor'
CHMfactor.o:CHMfactor.c:(.text+0x27e): undefined reference to
`cholmod_updown'
CHMfactor.o:CHMfactor.c:(.text+0x396): undefined reference to
`cholmod_spsolve'
CHMfactor.o:CHMfactor.c:(.text+0x620): undefined reference to
`cholmod_factorize_p'
CHMfactor.o:CHMfactor.c:(.text+0x658): undefined reference to
`cholmod_change_factor'
CHMfactor.o:CHMfactor.c:(.text+0x720): undefined reference to
`cholmod_copy_factor'
CHMfactor.o:CHMfactor.c:(.text+0x87b): undefined reference to
`cholmod_copy_factor'
CHMfactor.o:CHMfactor.c:(.text+0x8c3): undefined reference to
`cholmod_free_factor'
Csparse.o:Csparse.c:(.text+0x9f1): undefined reference to
`cholmod_sparse_to_dense'
Csparse.o:Csparse.c:(.text+0xcd6): undefined reference to `cholmod_speye'
Csparse.o:Csparse.c:(.text+0xd21): undefined reference to `cholmod_add'
Csparse.o:Csparse.c:(.text+0xd31): undefined reference to
`cholmod_free_sparse'
Csparse.o:Csparse.c:(.text+0xd3d): undefined reference to
`cholmod_copy_sparse'
Csparse.o:Csparse.c:(.text+0xd4c): undefined reference to
`cholmod_free_sparse'
Csparse.o:Csparse.c:(.text+0xdf9): undefined reference to `cholmod_copy'
Does this look familiar, please?
Thanks,
Erin
Erin Hodgess, PhD
mailto: erinm.hodgess at gmail.com
On Fri, Sep 14, 2018 at 1:13 PM Avraham Adler <avraham.adler at gmail.com>
wrote:
Hello!
I'm building a package that needs Openblas for matrix manipulation
speed up.
I built Openblas on Windows 10. I updated the MkRules.local,
src/extra/blas/Makefile.win, etc. Things are working with "make all".
However, when I run "make recommended", I have trouble with the Matrix
package build. The components of the Cholesky all appear as
unreferenced.
Has anyone else run into this, please? I'm working with R-3.5.1 source.
Thanks,
Erin
Erin Hodgess, PhD
mailto: erinm.hodgess at gmail.com
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