The following is in your NAMESPACE:
export(as.mcmc.list)
Don't export as.mcmc.list, presumably this is the one from 'coda ' it is rarely your responsibility.
Georgi Boshnakov
-----Original Message-----
From: R-package-devel [mailto:r-package-devel-bounces at r-project.org] On Behalf Of Joe Thorley
Sent: 12 April 2018 16:01
To: r-package-devel at r-project.org
Subject: [R-pkg-devel] extending as.mcmc.list
The S3 generic function coda::as.mcmc.list has a check exclusion in R-devel/src/library/tools/R/utils.R.
I am trying to extend it to objects of various classes
https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R <https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R>
However I get the note
Found the following apparent S3 methods exported but not registered:
as.mcmc.list
See section ?Registering S3 methods? in the ?Writing R Extensions?
manual.
Although this note is discussed on r-package-devel
https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html <https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html>
I am unclear about how I should resolve the issue.
Currently I am considering renaming the function to as.mcmc_list although this feels somewhat unsatisfactory.
Any advice is appreciated
Joe
Joe Thorley PhD, RPBio
Computational Biologist
Poisson Consulting Ltd.
4216 Shasheen Road
Nelson, BC
V1L 6X1, Canada
Tel: +1 250 551 2194
Email: joe at poissonconsulting.ca
Web: www.poissonconsulting.ca
Skype: joethorley
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