Hello, I?ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error: Error: object 'as_data_frame' is not exported by 'namespace:tidytree' The official ggtree developer solution to this known issue is to upgrade to Bioconductor 3.8, so I?m guessing the version used in the check is earlier? Is there anything I can do? Thanks, Matthew
[R-pkg-devel] Bioconductor dependencies => Windows checks failed
4 messages · Matthew Hall, Martin Morgan, Duncan Murdoch
Bioconductor 3.8 is the current release version of Bioconductor, and should be used by CRAN for current release versions of R. This seems perhaps like a stale installation on the Windows machine.
A link to the actual check report would be helpful.
Martin
?On 2/27/19, 9:25 AM, "R-package-devel on behalf of Matthew Hall" <r-package-devel-bounces at r-project.org on behalf of matthew.hall at bdi.ox.ac.uk> wrote:
Hello,
I?ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error:
Error: object 'as_data_frame' is not exported by 'namespace:tidytree'
The official ggtree developer solution to this known issue is to upgrade to Bioconductor 3.8, so I?m guessing the version used in the check is earlier? Is there anything I can do?
Thanks, Matthew
______________________________________________
R-package-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
On 27/02/2019 9:13 a.m., Matthew Hall wrote:
Hello, I?ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error: Error: object 'as_data_frame' is not exported by 'namespace:tidytree' The official ggtree developer solution to this known issue is to upgrade to Bioconductor 3.8, so I?m guessing the version used in the check is earlier? Is there anything I can do?
You can specify package versions in your DESCRIPTION file. If the ggtree version that requires tidytree::as_data_frame is numbered higher than one that doesn't, you should specify that, e.g. Imports: ggtree (>= 1.14.6), ... Duncan Murdoch
Sure, sorry. http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00check.log http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00install.out (the typo in the title is obviously gone)
On 27 February 2019 at 14:42:23, Martin Morgan (mtmorgan.bioc at gmail.com<mailto:mtmorgan.bioc at gmail.com>) wrote:
Bioconductor 3.8 is the current release version of Bioconductor, and should be used by CRAN for current release versions of R. This seems perhaps like a stale installation on the Windows machine. A link to the actual check report would be helpful. Martin ?On 2/27/19, 9:25 AM, "R-package-devel on behalf of Matthew Hall" <r-package-devel-bounces at r-project.org on behalf of matthew.hall at bdi.ox.ac.uk> wrote: Hello, I?ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error: Error: object 'as_data_frame' is not exported by 'namespace:tidytree' The official ggtree developer solution to this known issue is to upgrade to Bioconductor 3.8, so I?m guessing the version used in the check is earlier? Is there anything I can do? Thanks, Matthew ______________________________________________ R-package-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel