Message-ID: <a739b07c0901261724v1696815dq1fd95dd9859ff13c@mail.gmail.com>
Date: 2009-01-27T01:24:45Z
From: Stefan Th. Gries
Subject: rJava in R 2.8.1 on Ubuntu 8.10
Hi all
I have problems installing rJava on my system.
######## My system:
> R.version # at R prompt
platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 2
minor 8.1
year 2008
month 12
day 22
svn rev 47281
language R
version.string R version 2.8.1 (2008-12-22)
> java -version # at terminal prompt
java version "1.6.0_0"
IcedTea6 1.3.1 (6b12-0ubuntu6) Runtime Environment (build 1.6.0_0-b12)
OpenJDK 64-Bit Server VM (build 1.6.0_0-b12, mixed mode)
stgries at stgries-acer:~$
on Ubuntu 8.10 (Kernel 2.6.27-9)
on an AMD Phenom Triple-Core
The problem arises here:
java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server
-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64
-L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L
-L/usr/java/packages/lib/amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib
-ljvm'
configure: error: Java Development Kit (JDK) is missing or not registered in R
Make sure R is configured with full Java support (including JDK). Run
R CMD javareconf
as root to add Java support to R.
When I then do that
> sudo R CMD javareconf # at terminal
I get this:
Updating Java configuration in /etc/R
Done.
However, it still doesn't work, returning the same crap as before.
Also, when I try
> R CMD javareconf -e # at terminal
I just get
shift: 57: can't shift that many
Any hints would be much appreciated
STG