Message-ID: <87hbnkfysv.fsf@kolob.sebmags.homelinux.org>
Date: 2010-04-09T15:09:04Z
From: Sébastien Bihorel
Subject: problems loading blas with R 2.11.0~20100402-1
In-Reply-To: <1270816050.7208.1791.camel@zlarin> (Sylvestre Ledru's message of "Fri, 09 Apr 2010 14:27:30 +0200")
On Fri, 09 Apr 2010 14:27:30 +0200,
Sylvestre Ledru <sylvestre at debian.org> wrote:
> Le vendredi 09 avril 2010 ? 06:17 -0500, Dirk Eddelbuettel a ?crit :
>> On 8 April 2010 at 23:15, Sebastian P. Luque wrote:
>> | Hi,
>> |
>> | Since upgrading to version 2.11.0~20100402-1, starting R fails
>> with:
>> |
>> | /usr/lib64/R/bin/exec/R: error while loading shared libraries:
>> libblas.so.3gf: cannot open shared object file: No such file or
>> directory
>> |
>> | Is this occurring to others on sid?
>> I use Debian testing, and that same version works fine there.
>> This could be related to the recent Atlas / Blas change in
>> unstable. CCing Sylvestre just in case. Maybe we take this off-line
>> and compare blas + atlas package versions?
> Can you tell me which versions of blas and lapack (and atlas if
> relevant) you are using ? Both libraries and developments packages,
Sure, this is with:
$ dpkg-query -l 'libblas*'
Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Inst/Cfg-files/Unpacked/Failed-cfg/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
||/ Name Version Description
+++-=================-=================-==================================================
un libblas-3.so <none> (no description available)
un libblas-3gf.so <none> (no description available)
ii libblas-dev 1.2-7 Basic Linear Algebra Subroutines 3, static library
un libblas.so.3gf <none> (no description available)
ii libblas3gf 1.2-7 Basic Linear Algebra Reference implementations, sh
$ dpkg-query -l 'liblapack*'
Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Inst/Cfg-files/Unpacked/Failed-cfg/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
||/ Name Version Description
+++-=================-=================-==================================================
un liblapack-3.so <none> (no description available)
un liblapack-3gf.so <none> (no description available)
ii liblapack-dev 3.2.1-7 library of linear algebra routines 3 - static vers
un liblapack.so.3gf <none> (no description available)
ii liblapack3gf 3.2.1-7 library of linear algebra routines 3 - shared vers
$ dpkg-query -l 'libatlas*'
Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Inst/Cfg-files/Unpacked/Failed-cfg/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
||/ Name Version Description
+++-=================-=================-==================================================
un libatlas-base-dev <none> (no description available)
un libatlas.so.3gf <none> (no description available)
un libatlas3gf-3dnow <none> (no description available)
ii libatlas3gf-base 3.8.3-19 Automatically Tuned Linear Algebra Software, gener
un libatlas3gf-sse <none> (no description available)
un libatlas3gf-sse2 <none> (no description available)
Thank you both!
--
Seb