Upgrading to R 2.5.1 on Ubuntu Feisty 64
Hi Christophe, Thanks for posting here -- this should give you the audience for R questions on Debian / Ubuntu. I do use Ubuntu at work, but as maintainer of the package I do know its structture and simple rebuild (on x86). I think Johannes and Vincent have published sets of (Python?) scripts that automate fetching the package source and locally rebuilding. For small packages with small built-dependencies, this can be as trivial as a single apt-get call. For R it is typically not much more work, but R 2.5.1 did switch to compiler gcc-4.2 etc, so this time you need to do minimal editing of debian/control (to reduce the Build-Depends) and debian/rules (to undo the compiler setting from gcc-4.2 to gcc, same for g++, gfortran). That should be all. I hope others can pitch in with tips. I am a little pressed for time right now or I'd try to cook up a tutorial -- we should create one on the R or Debian or Ubuntu wikis as this package rebuilding is generally useful. Also do look if there are generic 'backporting' tutorials somewhere for Debian that show the mechanics. Please give it a try and post questions here. Cheers, Dirk
On Thu, Jul 26, 2007 at 11:57:12AM +0200, Christophe Bonenfant wrote:
Hi there, A new thread was started on the R list about problems to upgrade R to version 2.5.1 and we were re-directed on this list. We are two with exactly the same problem and the same distribution (Ubuntu Feisty 64). We are unable to upgrade to R 2.5.1. The r-base-core package is version 2.4.1 in Ubuntu repositories while all others r-cran related packages are upgraded to R 2.5.1 (r-base-dev,r-base...). This doesn't seem to be the case for the 32-bits version. Do you have any tips to go through this? Thanks. Christophe Details: $ uname -a Linux bronski 2.6.20-16-generic #2 SMP Thu Jun 7 19:00:28 UTC 2007 x86_64 GNU/Linux
> R.version
_ platform x86_64-pc-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 4.1 year 2006 month 12 day 18 svn rev 40228 language R version.string R version 2.4.1 (2006-12-18) $ cat /etc/apt/sources.list ... ## Cl? : gpg --keyserver subkeys.pgp.net --recv-key E2A11821 ## puis : gpg -a --export E2A11821 | sudo apt-key add - deb http://cran.univ-lyon1.fr/bin/linux/ubuntu feisty/ #deb http://cran.cict.fr//bin/linux/ubuntu feisty/ ... --
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