Accessto OpenBLAS
So I was passing this to my IT department but they have now abandoned me and I'm left to fend for myself.? I guess I have to learn how to do everything on my own now. I looked at the read.me.? It's pretty cryptic.? How does one link with -lopenblas to a shared library?? At the bash command line? Somewhere else?? Where? My machine has 4 Intel? Xeon? Processor X5650 CPUs.? On Intel's site they say each CPU has 6 cores and 12 threads.? Of course I want to take advatage of that horsepower. It looks like the environment variables can be setup when I launch R, correct? The questions is how?? There are three environment variables.? Which one should I use?? And how do I get R to pick up those environment variables.? (I'm usinf Rkward as a front end). There's some ambiguity in the read.me under known issues.? It says: The number of CPUs/Cores should less than or equal to 8*sizeof(unsigned long). On 64 bits, the limit is 64. ? I'm not sure what that implies in terms of my machine. To what values?do I set my environment variables? ? ----- Original Message ----- From: Dirk Eddelbuettel <edd at debian.org> To: Scott Raynaud <scott.raynaud at yahoo.com> Cc: "r-sig-debian at r-project.org" <r-sig-debian at r-project.org> Sent: Thursday, February 23, 2012 11:31 AM Subject: Re: [R-sig-Debian] Accessto OpenBLAS
On 23 February 2012 at 09:08, Scott Raynaud wrote:
| So my experiments have confirmed that the binary version of | OpenBLAS uses onlt two cores.? Should the compiled version | use more? | | I want figure out which package to utilize mulitiple cores in | a UNIX environment.? Did some research on this a while back | but it's a bit fuzzy right now.? My main concern is there's a | warning about BLAS and multiple cores in the install docs. | Will I run into problems? Did you see the README?? ? 4.Usages ? Link with libopenblas.a or -lopenblas for shared library. ? 4.1 Set the number of threads with environment variables. for example, ? export OPENBLAS_NUM_THREADS=4 ? ? or ? export GOTO_NUM_THREADS=4 ? ? or ? export OMP_NUM_THREADS=4 ? ? The priorities are OPENBLAS_NUM_THREADS > GOTO_NUM_THREADS > OMP_NUM_THREADS. ? ? If you compile this lib with USE_OPENMP=1, you should only set OMP_NUM_THREADS environment variable. Some BLAS libraries can respond to environment variables at run-time: MKL, GotoBlas and hence OpenBlas.? For others such as Atlas this is fixed at compile time. Dirk
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