Error gdata and gplots packages
At 16:34 24/02/2014, you wrote:
Dear Elodie Please do not reply to me personally but to the whole list You now give us a different error message. Is there any reason why you decided not to do this the first time? I do not think there is much we can do to help you until we are sure that you are telling us the whole story. Please give us a minimal reproducible example. I suspect your problem has nothing to do with Debian and might be more suitable for R-help.
These warnings stop the script execution in Shiny application (Rstudio shiny server packages) where gdata and gplots are loaded : An error has occurred The application failed to start. The application exited during initialization. gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. Attaching package: ?gdata? L'objet suivant est masqu? from ?package:stats?: nobs L'objet suivant est masqu? from ?package:utils?: object.size Erreur dans `[.data.frame`(cancerandtechno, , 1) : undefined columns selected Calls: runApp ... eval -> eval -> do.call -> strsplit -> [ -> [.data.frame Ex?cution arr?t?e Le 24/02/2014 17:33, Michael Dewey a ?crit :
At 16:17 24/02/2014, Elodie Chapeaublanc wrote:
Hi, I just installed Ubuntu 12.04.4. I installed R by following instructions from CRAN after modification into my /etc/apt/sources.list file sudo apt-get update sudo apt-get install r-base sudo apt-get install r-base-dev When I try to load library(gdata) ou library(gplots), I have error message :
Dear Elodie I am not that expert either at R or French but I do not see any error message there. See inline below
library(gdata)
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attachement du package : 'gdata'
L'objet suivant est masqu? from 'package:stats':
nobs
Is this what was concerning you?
L'objet suivant est masqu? from 'package:utils':
object.size
library(gplots)
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Attachement du package : 'gplots'
L'objet suivant est masqu? from 'package:stats':
lowess
At this point does running one of the examples from either package work?
sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8 [5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8 [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] gplots_2.12.1 gdata_2.13.2 loaded via a namespace (and not attached): [1] bitops_1.0-6 caTools_1.16 gtools_3.3.0 KernSmooth_2.23-10 Thanks, Elodie -- -- Elodie Chapeaublanc IE Bioinformatique ?quipe Oncologie Mol?culaire Institut Curie - UMR 144 - CNRS 26 rue d'Ulm - 75248 Paris Cedex 05 Tel: +33 1 56 24 63 57 Email: <mailto:elodie.chapeaublanc at curie.fr>elodie.chapeaublanc at curie.fr
_______________________________________________ R-SIG-Debian mailing list <mailto:R-SIG-Debian at r-project.org>R-SIG-Debian at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Michael Dewey <mailto:info at aghmed.fsnet.co.uk>info at aghmed.fsnet.co.uk http://www.aghmed.fsnet.co.uk/home.html
-- -- Elodie Chapeaublanc IE Bioinformatique ?quipe Oncologie Mol?culaire Institut Curie - UMR 144 - CNRS 26 rue d'Ulm - 75248 Paris Cedex 05 Tel: +33 1 56 24 63 57 Email: <mailto:elodie.chapeaublanc at curie.fr>elodie.chapeaublanc at curie.fr
Michael Dewey info at aghmed.fsnet.co.uk http://www.aghmed.fsnet.co.uk/home.html