Non-zero exit status for survival package
Fair enough Dirk, The sarcasm isn't warranted, however the console output is below. I apologize for the paucity of information in my previous post, however the error message I get from R (shown below in it "entirety") is also sparse in its information. R version 2.11.0 (2010-04-22) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
install.packages("survival")
Warning in install.packages("survival") :
argument 'lib' is missing: using '/usr/local/lib/R/site-library'
trying URL
'http://R-Forge.R-project.org/src/contrib/survival_2.35-9.tar.gz'
Content type 'application/x-gzip' length 672383 bytes (656 Kb)
opened URL
==================================================
downloaded 656 Kb
The downloaded packages are in
?/tmp/RtmpxVKTiu/downloaded_packages?
Warning message:
In install.packages("survival") :
installation of package 'survival' had non-zero exit status
On Sun, 2010-05-09 at 14:30 -0500, Dirk Eddelbuettel wrote:
On 9 May 2010 at 17:54, xplaner800 at comcast.net wrote: | I'm using 64-bit Karmic. I've tried to install many packages (including, survival, impute, samr) and others, all with the same resulting message of terminating with non-zero exit status. Our mid-reading machine is currently undergoing maintenance so unless you actually show us __the error message you are getting__ there is not much we can do to help. For what it is worth, many of us use Ubuntu or Debian daily on i386 and amd64 or other systems and we regularly install packages. You'll get there too, but you to do a little better so that we can help you. There is are FAQs on-line about 'how to ask good questions', see e.g. http://catb.org/~esr/faqs/smart-questions.html for one such guide. Dirk | Patrick | ----- Original Message ----- | From: "Michael Rutter" <mar36 at psu.edu> | To: r-sig-debian at r-project.org | Sent: Sunday, May 9, 2010 10:51:02 AM GMT -05:00 US/Canada Eastern | Subject: Re: [R-sig-Debian] Non-zero exit status for survival package | | Patrick, | | Can you give an example of a package that you have tried to install? Or | you using 32 or 64-bit Karmic? | | Thanks, | Michael | | On 05/09/2010 10:35 AM, Patrick Richardson wrote: | > I'm running R 2.11 on Karmic. I'm having difficulty installing quite a | > few packages with the returned error message of "installation of package | > "[whatever the packages happens to be]" had non-zero exit status. I know | > this message sometimes is caused by incorrect or missing java packages | > and the like. I generally don't have issues with the installation of R | > or R packages but I don't know where to start on this. I have looked to | > ensure that I have fortran and C++ compilers installed. I want to (if I | > can) avoid indiscriminately installing packages "until it starts | > working". I'm not sure how to go about troubleshooting this. Could | > anyone lend a hand, please? | > | > Thanks, | > Patrick | > | >> sessionInfo() | > R version 2.11.0 (2010-04-22) | > x86_64-pc-linux-gnu | > | > locale: | > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C | > LC_TIME=en_US.UTF-8 | > [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=C | > LC_MESSAGES=en_US.UTF-8 | > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C | > LC_ADDRESS=C | > [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 | > LC_IDENTIFICATION=C | > | > attached base packages: | > [1] stats graphics grDevices utils datasets methods | > base | > | > loaded via a namespace (and not attached): | > [1] tools_2.11.0 | > | >> capabilities() | > jpeg png tiff tcltk X11 aqua http/ftp sockets | > libxml fifo cledit | > TRUE TRUE TRUE TRUE TRUE FALSE TRUE TRUE | > TRUE TRUE TRUE | > iconv NLS profmem cairo | > TRUE TRUE TRUE TRUE | > | > _______________________________________________ | > R-SIG-Debian mailing list | > R-SIG-Debian at r-project.org | > https://stat.ethz.ch/mailman/listinfo/r-sig-debian | | -- | Dr. Michael A. Rutter | School of Science | Penn State Erie, The Behrend College | Station Road | Erie, PA 16563 | http://math.bd.psu.edu/faculty/rutter | | _______________________________________________ | R-SIG-Debian mailing list | R-SIG-Debian at r-project.org | https://stat.ethz.ch/mailman/listinfo/r-sig-debian | | [[alternative HTML version deleted]] | | | ---------------------------------------------------------------------- | _______________________________________________ | R-SIG-Debian mailing list | R-SIG-Debian at r-project.org | https://stat.ethz.ch/mailman/listinfo/r-sig-debian