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clean wheezy, R intrigue, squeeze-cran3 requires liblzma2?
5 messages · Charles Plessy, Johannes Ranke, Paul Johnson
Le Sat, May 11, 2013 at 04:25:14PM -0500, Paul Johnson a ?crit :
This is a completely clean, fresh install. I've not installed any peculiar libraries or packages, except R, the installation of which still puzzles me. I configured a CRAN mirror for packages using squeeze-cran3 folder, and that's where the first funny thing happened. I noticed same when R-2.15.3 came out, but I thought I had this trouble because my system was all junked up with unusual libraries. But now, on a clean system, I get this error, which indicates I need a package liblzma2, which does not exist in Debian:
The following packages have unmet dependencies:
r-base-core : Depends: liblzma2 (>= 4.999.9beta+20091116) but it is not
installable
Recommends: r-recommended but it is not going to be installed
Recommends: r-base-dev but it is not going to be installed
Recommends: r-doc-html but it is not going to be installed
Dear Paul, the packages in the squeeze-cran3 folder are built for the Debian "Squeeze" (6.0) distribution. The liblzma2 package exists in Squeeze, but not in Wheezy (Debian 7.0, the distribution you used for your fresh install). Downgrades are not supported, as exemplified by your problem. Debian Wheezy was released just one week ago, so I guess it is only a matter of time before a "wheezy-cran" folder will be provided. Best regards,
Charles Plessy Tsurumi, Kanagawa, Japan
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Hi, The R 3 packages for wheezy are currently being built for i386 and amd64. If all goes well, they will be available within the next two days. As for R on Debian wheezy, I just checked demo(plotmath) on the default R 2.15.1 on wheezy, and it produced all the nice plotting symbols I would expect in good quality. I realize this does not help you, I just want to make clear that wheezy is not the problem here. I will check the wheezy backport for proper functioning of plotmath. Kind regards, Johannes Am Sonntag, 12. Mai 2013, 15:09:59 schrieb Paul Johnson:
Thanks Charles, but ... (below) On Sat, May 11, 2013 at 6:28 PM, Charles Plessy <charles-r-nospam at plessy.org
wrote: Le Sat, May 11, 2013 at 04:25:14PM -0500, Paul Johnson a ?crit : Dear Paul, the packages in the squeeze-cran3 folder are built for the Debian "Squeeze" (6.0) distribution. The liblzma2 package exists in Squeeze, but not in Wheezy (Debian 7.0, the distribution you used for your fresh install). Downgrades are not supported, as exemplified by your problem. Debian Wheezy was released just one week ago, so I guess it is only a matter of time before a "wheezy-cran" folder will be provided. Best regards,
I agree to your interpretation of the packaging problem. I can post the R packages for Wheezy on my website if anybody wants them. Now, back to the "no glyph" problem. Does
demo(plotmath)
work for you on Debian 7? Here's a re-producible example that generates bad on-screen output for me. plot(0~0, type = "n") text(.4, expression(group(lceil,x, rceil)), cex=0.5) The glyphs for the left and right braces look like "dominoes". I found a thread from 2010 about a similar problem, but that case blamed the Wine fonts. Now I suspect some other bad symbol font has found its way to the front of my path. https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14355 That thread points out that using the Xlib version of the X11 device SOLVES the problem, but at the price of slightly lower quality of output. If I want to use the default Cairo device, apparently I have to fiddle something. I am experimenting with the debugging and fontconfig adjustments that might be used to avoid the trouble. To the non-full-time-font administrator like me, this is a bit overwhelming because there are so many different types of fonts. pj
-- Charles Plessy
1 day later
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