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How to install libisl.so.19 on chromebook?

6 messages · Dirk Eddelbuettel, Luigi Marongiu, Johannes Ranke

Original
Luigi Marongiu
# 
I am trying to install minpack.lm on R 3.3.3 (Debian version) on a
Chromebook. But I get this error:
```
Installing package into ?/home/marongiuluigi/R/x86_64-pc-linux-gnu-library/3.3?
(as ?lib? is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/minpack.lm_1.2-1.tar.gz'
Content type 'application/x-gzip' length 43029 bytes (42 KB)
==================================================
downloaded 42 KB

* installing *source* package ?minpack.lm? ...
** package ?minpack.lm? successfully unpacked and MD5 sums checked
** libs
gfortran   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=.
-fstack-protector-strong  -c chkder.f -o chkder.o
/usr/local/libexec/gcc/x86_64-cros-linux-gnu/8.3.0/f951: error while
loading shared libraries: libisl.so.19: cannot open shared object
file: No such file or directory
/usr/lib/R/etc/Makeconf:155: recipe for target 'chkder.o' failed
make: *** [chkder.o] Error 1
ERROR: compilation failed for package ?minpack.lm?
* removing ?/home/marongiuluigi/R/x86_64-pc-linux-gnu-library/3.3/minpack.lm?
Warning in install.packages :
  installation of package ?minpack.lm? had non-zero exit status
```
I tried to install  libisl.so.19 but:
```
$ sudo apt-get install libisl.so.19
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Unable to locate package libisl.so.19
E: Couldn't find any package by glob 'libisl.so.19'
E: Couldn't find any package by regex 'libisl.so.19'
```
I downloaded libisl.so.19 for debian, but where shall I place it?
Is there an easier way to install this library?
Thank you
Dirk Eddelbuettel
#
On 14 July 2020 at 12:26, Luigi Marongiu wrote:
| I am trying to install minpack.lm on R 3.3.3 (Debian version) on a
| Chromebook. But I get this error:
| ```
| > install.packages("minpack.lm")
| Installing package into ?/home/marongiuluigi/R/x86_64-pc-linux-gnu-library/3.3?
| (as ?lib? is unspecified)
| trying URL 'https://cran.rstudio.com/src/contrib/minpack.lm_1.2-1.tar.gz'
| Content type 'application/x-gzip' length 43029 bytes (42 KB)
| ==================================================
| downloaded 42 KB
| 
| * installing *source* package ?minpack.lm? ...
| ** package ?minpack.lm? successfully unpacked and MD5 sums checked
| ** libs
| gfortran   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=.
| -fstack-protector-strong  -c chkder.f -o chkder.o
| /usr/local/libexec/gcc/x86_64-cros-linux-gnu/8.3.0/f951: error while
| loading shared libraries: libisl.so.19: cannot open shared object
| file: No such file or directory
| /usr/lib/R/etc/Makeconf:155: recipe for target 'chkder.o' failed
| make: *** [chkder.o] Error 1
| ERROR: compilation failed for package ?minpack.lm?
| * removing ?/home/marongiuluigi/R/x86_64-pc-linux-gnu-library/3.3/minpack.lm?
| Warning in install.packages :
|   installation of package ?minpack.lm? had non-zero exit status
| ```
| I tried to install  libisl.so.19 but:
| ```
| $ sudo apt-get install libisl.so.19
| Reading package lists... Done
| Building dependency tree
| Reading state information... Done
| E: Unable to locate package libisl.so.19
| E: Couldn't find any package by glob 'libisl.so.19'
| E: Couldn't find any package by regex 'libisl.so.19'
| ```
| I downloaded libisl.so.19 for debian, but where shall I place it?
| Is there an easier way to install this library?
| Thank you

That is not the correct package name as it is a _file name_.

Use eg

 https://packages.debian.org/

to search (go to Search the contents of packages) or search directly via

 apt search libisl

which will lead you to packages

 libisl-dev
 libisl22           # on the release I run on Ubuntu right now

with a major name reflecting the current release. For an older version I find
the package search above useful, there are other pages too.

Hope this helps,  Dirk
Luigi Marongiu
# 
Thank you, it looks like I have already libisl:
```
apt search libisl
Sorting... Done
Full Text Search... Done
libisl-dbg/oldstable 0.18-1 amd64
  manipulating sets and relations of integer points bounded by linear
constraints

libisl-dev/oldstable 0.18-1 amd64
  manipulating sets and relations of integer points bounded by linear
constraints

libisl15/oldstable,now 0.18-1 amd64 [installed,automatic]
  manipulating sets and relations of integer points bounded by linear
constraints

libisl19/now 0.19-1 amd64 [installed,local]
  manipulating sets and relations of integer points bounded by linear
constraints
```
thus the problem must be with the installation step: I should tell the
compiler to look for libisl19 instead of  libisl.so.19...
On Tue, Jul 14, 2020 at 12:54 PM Dirk Eddelbuettel <edd at debian.org> wrote:

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Dirk Eddelbuettel
    

    

      
      #
    

  


  

      
There is something wrong with your system / setup I did not notice first:

        
On 14 July 2020 at 13:08, Luigi Marongiu wrote:

        
| Thank you, it looks like I have already libisl:
| ```
| apt search libisl
| Sorting... Done
| Full Text Search... Done
| libisl-dbg/oldstable 0.18-1 amd64
|   manipulating sets and relations of integer points bounded by linear
| constraints
| 
| libisl-dev/oldstable 0.18-1 amd64
|   manipulating sets and relations of integer points bounded by linear
| constraints
| 
| libisl15/oldstable,now 0.18-1 amd64 [installed,automatic]
|   manipulating sets and relations of integer points bounded by linear
| constraints
| 
| libisl19/now 0.19-1 amd64 [installed,local]
|   manipulating sets and relations of integer points bounded by linear
| constraints
| ```
| thus the problem must be with the installation step: I should tell the
| compiler to look for libisl19 instead of  libisl.so.19...
|

        
| On Tue, Jul 14, 2020 at 12:54 PM Dirk Eddelbuettel <edd at debian.org> wrote:

        
| >
| >

        
| > On 14 July 2020 at 12:26, Luigi Marongiu wrote:

        
| > | I am trying to install minpack.lm on R 3.3.3 (Debian version) on a
| > | Chromebook. But I get this error:
| > | ```
| > | > install.packages("minpack.lm")
| > | Installing package into ?/home/marongiuluigi/R/x86_64-pc-linux-gnu-library/3.3?
| > | (as ?lib? is unspecified)
| > | trying URL 'https://cran.rstudio.com/src/contrib/minpack.lm_1.2-1.tar.gz'
| > | Content type 'application/x-gzip' length 43029 bytes (42 KB)
| > | ==================================================
| > | downloaded 42 KB
| > |
| > | * installing *source* package ?minpack.lm? ...
| > | ** package ?minpack.lm? successfully unpacked and MD5 sums checked
| > | ** libs
| > | gfortran   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=.
| > | -fstack-protector-strong  -c chkder.f -o chkder.o
| > | /usr/local/libexec/gcc/x86_64-cros-linux-gnu/8.3.0/f951: error while

Why is gfortran calling into /usr/local?

You are outside of the package management system here.  Can you not use the
package gfortran (and gcc, g++, ...) because ...

| > | loading shared libraries: libisl.so.19: cannot open shared object
| > | file: No such file or directory
| > | /usr/lib/R/etc/Makeconf:155: recipe for target 'chkder.o' failed

... you are trying the packaged R.

Dirk

| > | make: *** [chkder.o] Error 1
| > | ERROR: compilation failed for package ?minpack.lm?
| > | * removing ?/home/marongiuluigi/R/x86_64-pc-linux-gnu-library/3.3/minpack.lm?
| > | Warning in install.packages :
| > |   installation of package ?minpack.lm? had non-zero exit status
| > | ```
| > | I tried to install  libisl.so.19 but:
| > | ```
| > | $ sudo apt-get install libisl.so.19
| > | Reading package lists... Done
| > | Building dependency tree
| > | Reading state information... Done
| > | E: Unable to locate package libisl.so.19
| > | E: Couldn't find any package by glob 'libisl.so.19'
| > | E: Couldn't find any package by regex 'libisl.so.19'
| > | ```
| > | I downloaded libisl.so.19 for debian, but where shall I place it?
| > | Is there an easier way to install this library?
| > | Thank you
| >
| > That is not the correct package name as it is a _file name_.
| >
| > Use eg
| >
| >  https://packages.debian.org/
| >
| > to search (go to Search the contents of packages) or search directly via
| >
| >  apt search libisl
| >
| > which will lead you to packages
| >
| >  libisl-dev
| >  libisl22           # on the release I run on Ubuntu right now
| >
| > with a major name reflecting the current release. For an older version I find
| > the package search above useful, there are other pages too.
| >
| > Hope this helps,  Dirk
| >
| > --
| > https://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
| 
| 
| 
| -- 
| Best regards,
| Luigi

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Luigi Marongiu
    

    

      
      #
    

  


  

      
I don't know about the configuration. I installed R using the standard
protocol for Chromebook
http://blog.sellorm.com/2018/12/20/installing-r-and-rstudio-on-a-chromebook/
the rest, it was done by the system itself...

        
On Tue, Jul 14, 2020 at 1:30 PM Dirk Eddelbuettel <edd at debian.org> wrote:

            

      
      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Johannes Ranke
    

    

      
      #
    

  


  

      
Am Dienstag, 14. Juli 2020, 13:57:01 CEST schrieb Luigi Marongiu:

            

      
      
      
    

        
Hi Luigi,

I would not call this a standard protocol. I would say, it is a 1.5 year old 
blog telling you how to use a beta feature (at the time of writing) of 
ChromeOS to install R and RStudio on ChromeOS.

This would have been interesting to know the last time you had a question for 
this mailing list. On 27 May you mentioned that you are using this line

  deb http://cloud.r-project.org/bin/linux/debian buster-cran40/

In the blog, it is suggested that the Linux distribution that the Chromebook 
runs is Debian stretch. If your Chrombook runs Debian stretch, you need to use 
a backport for stretch, not for buster. However, I am currently not providing 
R 4 packages for stretch, as I do not run stretch systems any more.

What is the output of lsb_release -a on your system?

Johannes

            

      
      
      
    

        
wrote:

            

      
      
      
    

        
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