Hello:
I am tried to install the RODBC package in debian etch. At the end of the
installation it appears errors:
**********************************************
* Installing *source* package 'RODBC' ...
checking for gcc...
gcc -std=gnu99
checking for C compiler default output file name...
a.out
checking whether the C compiler works...
yes
checking whether we are cross compiling...
no
checking for suffix of executables...
checking for suffix of object files...
o
.............
checking for stdint.h...
yes
checking for unistd.h...
yes
checking sql.h usability...
no
checking sql.h presence...
no
checking for sql.h...
no
checking sqlext.h usability...
no
checking sqlext.h presence...
no
checking for sqlext.h...
no
configure: error: "ODBC headers sql.h and sqlext.h not found"
ERROR: configuration failed for package 'RODBC'
** Removing '/usr/local/lib/R/site-library/RODBC'
The downloaded packages are in
/tmp/RtmpOnB5P3/downloaded_packages
Warning message:
In install.packages(pkgs = c("RODBC"), lib
= "/usr/local/lib/R/site-library", :
installation of package 'RODBC' had non-zero exit status
**********************************************
And the package is not installed.
I am using the repositorios of:
deb http://cran.cict.fr/bin/linux/debian etch-cran/
Problems when installing RODBC in debian etch
16 messages · Dirk Eddelbuettel, Markus Jäntti, Griera +2 more
On 26 June 2008 at 16:20, griera at gmail.com wrote:
| Hello: | | I am tried to install the RODBC package in debian etch. At the end of the | installation it appears errors: [...] | Somebody knows which is the problem and the solution? Well this has been maintained as a package in Debian for years so I'd start with sudo apt-get install r-cran-rodbc If you still want to build locally, use the Build-Depends the package gives you. Hth, Dirk
Three out of two people have difficulties with fractions.
Hi,
You can either use Dirks package using
apt-get install r-cran-rodbc
which will pull the needed libraries, or install a more recent version
from CRAN. For this you need the build dependencies which you can likely
get by
apt-get build-dep r-cran-rodbc
provided you have a source entry in your /etc/apt/sources.list
Johannes
* griera at gmail.com <griera at gmail.com> [080626 16:30]:
Hello:
I am tried to install the RODBC package in debian etch. At the end of the
installation it appears errors:
**********************************************
* Installing *source* package 'RODBC' ...
checking for gcc...
gcc -std=gnu99
checking for C compiler default output file name...
a.out
checking whether the C compiler works...
yes
checking whether we are cross compiling...
no
checking for suffix of executables...
checking for suffix of object files...
o
.............
checking for stdint.h...
yes
checking for unistd.h...
yes
checking sql.h usability...
no
checking sql.h presence...
no
checking for sql.h...
no
checking sqlext.h usability...
no
checking sqlext.h presence...
no
checking for sqlext.h...
no
configure: error: "ODBC headers sql.h and sqlext.h not found"
ERROR: configuration failed for package 'RODBC'
** Removing '/usr/local/lib/R/site-library/RODBC'
The downloaded packages are in
/tmp/RtmpOnB5P3/downloaded_packages
Warning message:
In install.packages(pkgs = c("RODBC"), lib
= "/usr/local/lib/R/site-library", :
installation of package 'RODBC' had non-zero exit status
**********************************************
And the package is not installed.
I am using the repositorios of:
deb http://cran.cict.fr/bin/linux/debian etch-cran/
From the debian official repositorios I have installed the package:
odbcinst1debian1 I have the same problem if instead of odbcinst1debian1 I install unixodbc Somebody knows which is the problem and the solution? Thank you for your help G Riera
_______________________________________________ R-SIG-Debian mailing list R-SIG-Debian at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Dr. Johannes Ranke jranke at uni-bremen.de Brahmsstr. 4 D-28209 Bremen ab 1.8.2008: Kronacherstr. 8, D-79639 Grenzach-Wyhlen
To compile, you'd need a -dev package for the odbc package you are using. However, you can instead just install the debian paclage r-cran-rodbc. markus
On Thu, 2008-06-26 at 16:20 +0200, griera at gmail.com wrote:
Hello:
I am tried to install the RODBC package in debian etch. At the end of the
installation it appears errors:
**********************************************
* Installing *source* package 'RODBC' ...
checking for gcc...
gcc -std=gnu99
checking for C compiler default output file name...
a.out
checking whether the C compiler works...
yes
checking whether we are cross compiling...
no
checking for suffix of executables...
checking for suffix of object files...
o
.............
checking for stdint.h...
yes
checking for unistd.h...
yes
checking sql.h usability...
no
checking sql.h presence...
no
checking for sql.h...
no
checking sqlext.h usability...
no
checking sqlext.h presence...
no
checking for sqlext.h...
no
configure: error: "ODBC headers sql.h and sqlext.h not found"
ERROR: configuration failed for package 'RODBC'
** Removing '/usr/local/lib/R/site-library/RODBC'
The downloaded packages are in
/tmp/RtmpOnB5P3/downloaded_packages
Warning message:
In install.packages(pkgs = c("RODBC"), lib
= "/usr/local/lib/R/site-library", :
installation of package 'RODBC' had non-zero exit status
**********************************************
And the package is not installed.
I am using the repositorios of:
deb http://cran.cict.fr/bin/linux/debian etch-cran/
From the debian official repositorios I have installed the package:
odbcinst1debian1 I have the same problem if instead of odbcinst1debian1 I install unixodbc Somebody knows which is the problem and the solution? Thank you for your help G Riera
_______________________________________________ R-SIG-Debian mailing list R-SIG-Debian at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Markus Jantti Abo Akademi University mjantti at abo.fi http://www.iki.fi/~mjantti
A Dijous 26 Juny 2008 16:52, Dirk Eddelbuettel va escriure:
On 26 June 2008 at 16:20, griera at gmail.com wrote: | Hello: | | I am tried to install the RODBC package in debian etch. At the end of the | installation it appears errors: [...] | Somebody knows which is the problem and the solution? Well this has been maintained as a package in Debian for years so I'd start with sudo apt-get install r-cran-rodbc
Thanks a lot. I have installed the package without problems with this command. Regards.
If you still want to build locally, use the Build-Depends the package gives you. Hth, Dirk
Hello: I have installed the package without problems with this order: $ sudo apt-get install r-cran-rodbc but, when I tried to load it using library(RODBC) I get the following error: > library(RODBC) Error in Sys.localeconv()$decimal_point : $ operator is invalid for atomic vectors Error : .onLoad failed in 'loadNamespace' for 'RODBC' Error: package/namespace load failed for 'RODBC' What I'm doing wrong? Thanks a lot.
On 26 June 2008 at 18:14, griera at gmail.com wrote:
| Hello: | | I have installed the package without problems with this order: | | $ sudo apt-get install r-cran-rodbc | | but, when I tried to load it using library(RODBC) I get the following error: | | > library(RODBC) Error in Sys.localeconv()$decimal_point : | $ operator is invalid for atomic vectors | Error : .onLoad failed in 'loadNamespace' for 'RODBC' | Error: package/namespace load failed for 'RODBC' | | What I'm doing wrong? Thanks a lot. It looks like the package and your R version are out of sync. What R version are you using? Did you get it from Debian like r-cran-rodbc ? Dirk
Three out of two people have difficulties with fractions.
Hi: A Divendres 27 Juny 2008 04:14, Dirk Eddelbuettel va escriure:
On 26 June 2008 at 18:14, griera at gmail.com wrote: | but, when I tried to load it using library(RODBC) I get the following
error:
| > library(RODBC) Error in Sys.localeconv()$decimal_point : | | $ operator is invalid for atomic vectors | Error : .onLoad failed in 'loadNamespace' for 'RODBC' | Error: package/namespace load failed for 'RODBC' | | What I'm doing wrong? Thanks a lot. It looks like the package and your R version are out of sync. What R version are you using? Did you get it from Debian like r-cran-rodbc ?
The version of the packages is: r-base-core 2.7.1-1~etchcran.0 r-cran-rodbc 1.1.7-1 1.1.7-1 I have installed the package with the command: $ sudo apt-get install r-cran-rodbc In the sources.list I have (in this order): deb http://cran.cict.fr/bin/linux/debian etch-cran/ deb http://security.debian.org/ etch/updates main contrib non-free deb http://ftp.fr.debian.org/debian/ etch main contrib non-free This is OK? Thanks a lot. G Riera
Dirk
On 27 June 2008 at 08:28, griera at gmail.com wrote:
| Hi: | | A Divendres 27 Juny 2008 04:14, Dirk Eddelbuettel va escriure:
| > On 26 June 2008 at 18:14, griera at gmail.com wrote:
| > | but, when I tried to load it using library(RODBC) I get the following | error: | > | > library(RODBC) Error in Sys.localeconv()$decimal_point : | > | | > | $ operator is invalid for atomic vectors | > | Error : .onLoad failed in 'loadNamespace' for 'RODBC' | > | Error: package/namespace load failed for 'RODBC' | > | | > | What I'm doing wrong? Thanks a lot. | > | > It looks like the package and your R version are out of sync. What R | > version are you using? Did you get it from Debian like r-cran-rodbc ? | | The version of the packages is: | r-base-core 2.7.1-1~etchcran.0 | r-cran-rodbc 1.1.7-1 1.1.7-1 Ah, yes, "it is our fault" -- you are using the new R via the CRAN repos (which is the Right Thing if you want newer R). But it turns out that that version is no longer compatible with the RODBC version in Debian etch. In Debian testing and unstable, we are at RODBC 1.2.3-1. | I have installed the package with the command: | $ sudo apt-get install r-cran-rodbc | In the sources.list I have (in this order): | deb http://cran.cict.fr/bin/linux/debian etch-cran/ | deb http://security.debian.org/ etch/updates main contrib non-free | deb http://ftp.fr.debian.org/debian/ etch main contrib non-free | This is OK? It is, it is just that "we" are trying to help by offering a newer R, yet are conflicting with the older RODBC. It really is a problem with the older Debian etch. So you do need to rebuild RODBC, either build your own r-cran-rodbc from sources (so you would take the sources from current Debian and rebuild on your machine) or use R's facilities -- whichever you are most familiar with. | Thanks a lot. G Riera Thanks for your patience, Dirk
Three out of two people have difficulties with fractions.
Hi,
I just added RODBC to the list of packages maintained for the Debian
etch backports on CRAN. The r-cran-rodbc packages are on their way to
CRAN - if you want them now, you can use
deb http://chem.uft.uni-bremen.de/r-cran etch-cran/
as an alternative.
Johannes
* Dirk Eddelbuettel <edd at debian.org> [080627 13:30]:
On 27 June 2008 at 08:28, griera at gmail.com wrote: | Hi: | | A Divendres 27 Juny 2008 04:14, Dirk Eddelbuettel va escriure: | > On 26 June 2008 at 18:14, griera at gmail.com wrote: | > | but, when I tried to load it using library(RODBC) I get the following | error: | > | > library(RODBC) Error in Sys.localeconv()$decimal_point : | > | | > | $ operator is invalid for atomic vectors | > | Error : .onLoad failed in 'loadNamespace' for 'RODBC' | > | Error: package/namespace load failed for 'RODBC' | > | | > | What I'm doing wrong? Thanks a lot. | > | > It looks like the package and your R version are out of sync. What R | > version are you using? Did you get it from Debian like r-cran-rodbc ? | | The version of the packages is: | r-base-core 2.7.1-1~etchcran.0 | r-cran-rodbc 1.1.7-1 1.1.7-1 Ah, yes, "it is our fault" -- you are using the new R via the CRAN repos (which is the Right Thing if you want newer R). But it turns out that that version is no longer compatible with the RODBC version in Debian etch. In Debian testing and unstable, we are at RODBC 1.2.3-1. | I have installed the package with the command: | $ sudo apt-get install r-cran-rodbc | In the sources.list I have (in this order): | deb http://cran.cict.fr/bin/linux/debian etch-cran/ | deb http://security.debian.org/ etch/updates main contrib non-free | deb http://ftp.fr.debian.org/debian/ etch main contrib non-free | This is OK? It is, it is just that "we" are trying to help by offering a newer R, yet are conflicting with the older RODBC. It really is a problem with the older Debian etch. So you do need to rebuild RODBC, either build your own r-cran-rodbc from sources (so you would take the sources from current Debian and rebuild on your machine) or use R's facilities -- whichever you are most familiar with. | Thanks a lot. G Riera Thanks for your patience, Dirk -- Three out of two people have difficulties with fractions.
_______________________________________________ R-SIG-Debian mailing list R-SIG-Debian at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Dr. Johannes Ranke jranke at uni-bremen.de Brahmsstr. 4 D-28209 Bremen ab 1.8.2008: Kronacherstr. 8, D-79639 Grenzach-Wyhlen
Johannes,
On 27 June 2008 at 17:05, Johannes Ranke wrote:
| Hi, | | I just added RODBC to the list of packages maintained for the Debian | etch backports on CRAN. The r-cran-rodbc packages are on their way to | CRAN - if you want them now, you can use | | deb http://chem.uft.uni-bremen.de/r-cran etch-cran/ | | as an alternative. Super -- thanks for the quick addition! Depending on how much energy and time you have, you could try to establish contact with the folks at backport.org so that other Debian users (who may not know about the CRAN repos) could get it too. Just a thought. Cheers, Dirk
Three out of two people have difficulties with fractions.
* Dirk Eddelbuettel <edd at debian.org> [080627 19:30]:
Johannes, On 27 June 2008 at 17:05, Johannes Ranke wrote: | Hi, | | I just added RODBC to the list of packages maintained for the Debian | etch backports on CRAN. The r-cran-rodbc packages are on their way to | CRAN - if you want them now, you can use | | deb http://chem.uft.uni-bremen.de/r-cran etch-cran/ | | as an alternative. Super -- thanks for the quick addition! Depending on how much energy and time you have, you could try to establish contact with the folks at backport.org so that other Debian users (who may not know about the CRAN repos) could get it too. Just a thought.
Yes - I would have to make the packages compatible to their policy and need a Debian Developer to do the uploads. Johannes
On 27 June 2008 at 21:46, Johannes Ranke wrote:
| * Dirk Eddelbuettel <edd at debian.org> [080627 19:30]: | > | > Johannes, | >
| > On 27 June 2008 at 17:05, Johannes Ranke wrote:
| > | Hi, | > | | > | I just added RODBC to the list of packages maintained for the Debian | > | etch backports on CRAN. The r-cran-rodbc packages are on their way to | > | CRAN - if you want them now, you can use | > | | > | deb http://chem.uft.uni-bremen.de/r-cran etch-cran/ | > | | > | as an alternative. | > | > Super -- thanks for the quick addition! | > | > Depending on how much energy and time you have, you could try to establish | > contact with the folks at backport.org so that other Debian users (who may | > not know about the CRAN repos) could get it too. Just a thought. | | Yes - I would have to make the packages compatible to their policy and | need a Debian Developer to do the uploads. I see -- as backports.org is not 'officially' Debian I was hoping that it may have a more lenient upload policy. Guess we'll make do with CRAN then. Could you make sure the README reflects your package ports too? Thanks again, Dirk
Three out of two people have difficulties with fractions.
Le ven. 27 juin ? 11:05, Johannes Ranke a ?crit :
Hi, I just added RODBC to the list of packages maintained for the Debian etch backports on CRAN.
<Sigh :-> Did the same on Ubuntu i386. README update, too. Vincent
The r-cran-rodbc packages are on their way to CRAN - if you want them now, you can use deb http://chem.uft.uni-bremen.de/r-cran etch-cran/ as an alternative. Johannes * Dirk Eddelbuettel <edd at debian.org> [080627 13:30]:
On 27 June 2008 at 08:28, griera at gmail.com wrote: | Hi: | | A Divendres 27 Juny 2008 04:14, Dirk Eddelbuettel va escriure: | > On 26 June 2008 at 18:14, griera at gmail.com wrote: | > | but, when I tried to load it using library(RODBC) I get the following | error: | > | > library(RODBC) Error in Sys.localeconv()$decimal_point : | > | | > | $ operator is invalid for atomic vectors | > | Error : .onLoad failed in 'loadNamespace' for 'RODBC' | > | Error: package/namespace load failed for 'RODBC' | > | | > | What I'm doing wrong? Thanks a lot. | > | > It looks like the package and your R version are out of sync. What R | > version are you using? Did you get it from Debian like r-cran- rodbc ? | | The version of the packages is: | r-base-core 2.7.1-1~etchcran.0 | r-cran-rodbc 1.1.7-1 1.1.7-1 Ah, yes, "it is our fault" -- you are using the new R via the CRAN repos (which is the Right Thing if you want newer R). But it turns out that that version is no longer compatible with the RODBC version in Debian etch. In Debian testing and unstable, we are at RODBC 1.2.3-1. | I have installed the package with the command: | $ sudo apt-get install r-cran-rodbc | In the sources.list I have (in this order): | deb http://cran.cict.fr/bin/linux/debian etch-cran/ | deb http://security.debian.org/ etch/updates main contrib non-free | deb http://ftp.fr.debian.org/debian/ etch main contrib non-free | This is OK? It is, it is just that "we" are trying to help by offering a newer R, yet are conflicting with the older RODBC. It really is a problem with the older Debian etch. So you do need to rebuild RODBC, either build your own r-cran-rodbc from sources (so you would take the sources from current Debian and rebuild on your machine) or use R's facilities -- whichever you are most familiar with. | Thanks a lot. G Riera Thanks for your patience, Dirk -- Three out of two people have difficulties with fractions.
_______________________________________________ R-SIG-Debian mailing list R-SIG-Debian at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
-- Dr. Johannes Ranke jranke at uni-bremen.de Brahmsstr. 4 D-28209 Bremen ab 1.8.2008: Kronacherstr. 8, D-79639 Grenzach-Wyhlen
_______________________________________________ R-SIG-Debian mailing list R-SIG-Debian at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
* Vincent Goulet <vincent.goulet at act.ulaval.ca> [080628 00:20]:
Le ven. 27 juin ? 11:05, Johannes Ranke a ?crit :
Hi, I just added RODBC to the list of packages maintained for the Debian etch backports on CRAN.
<Sigh :-> Did the same on Ubuntu i386. README update, too.
Your're still ahead of me with ess, which I skipped until someone complains... Johannes
* Dirk Eddelbuettel <edd at debian.org> [080627 22:10]:
On 27 June 2008 at 21:46, Johannes Ranke wrote: | * Dirk Eddelbuettel <edd at debian.org> [080627 19:30]: | > | > Johannes, | > | > On 27 June 2008 at 17:05, Johannes Ranke wrote: | > | Hi, | > | | > | I just added RODBC to the list of packages maintained for the Debian | > | etch backports on CRAN. The r-cran-rodbc packages are on their way to | > | CRAN - if you want them now, you can use | > | | > | deb http://chem.uft.uni-bremen.de/r-cran etch-cran/ | > | | > | as an alternative. | > | > Super -- thanks for the quick addition! | > | > Depending on how much energy and time you have, you could try to establish | > contact with the folks at backport.org so that other Debian users (who may | > not know about the CRAN repos) could get it too. Just a thought. | | Yes - I would have to make the packages compatible to their policy and | need a Debian Developer to do the uploads. I see -- as backports.org is not 'officially' Debian I was hoping that it may have a more lenient upload policy. Guess we'll make do with CRAN then. Could you make sure the README reflects your package ports too?
Sorry, I only updated the README, not the more visible README.html - now on its way. Johannes