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RDA vegan: correlation coefficient among environment variables, species axes and environmental axes results

On 29/08/11 19:14 PM, "Oscar Galli" <ogalli at dinara.gub.uy> wrote:

            
Oscar,

I'm not quite sure what all these are, but the following may give some of
the things you asked:

## make a reproducible example
library(vegan)
data(varespec)
data(varechem)
mod <- rda(varespec ~  Al + P + K, varechem)
## species--environment correlation
spenvcor(mod)
## "interset" correlation
intersetcor(mod)
## correlations among constraints (why?)
cor(model.frame(mod))

HTH, 

Jari Oksanen