Error using mcp2atm function for robust pairwise comparisons
Dear Renato, It's good to hear that the original error disappeared. Regarding the new error, I have no idea, maybe some members of the mailing list are familiar with this packages/function and can help you. In the meantime, you might want to try calling traceback() right after the error. It may help you figure out the origin of this error. Also you can check the source code of smmcrit() (https://rdrr.io/cran/WRS2/src/R/smmcrit.R) and mcp2atm() (https://rdrr.io/rforge/WRS2/src/R/mcp2atm.R) to understand the not-too-informative error message. Have a nice weekend, ?kos ______________ ?kos Bede-Fazekas Centre for Ecological Research, Hungary 2024. 07. 28. 3:49 keltez?ssel, Renato Filogonio ?rta:
Dear ?kos,
Thank you so much for your response. I tried your suggestion and it did
solve that error message from before, but another message appears now:
Error in smmcrit(df, ncol(con)) : C must be less than or equal to 28
I tried to look for the correction of this error, but I could not find it
anywhere.
The t2way() function works fine as before, but the mcp2atm() function is
still problematic. I put below the dataset used for this analysis.
i t c fr0 Warm 1 050 Warm 1 2100 Warm 1 6150
Warm 1 16200 Warm 1 20250 Warm 1 24300 Warm 1
26350 Warm 1 28400 Warm 1 32450 Warm 1 34500 Warm 1
36550 Warm 1 38600 Warm 1 40650 Warm 1 42700 Warm 1
44750 Warm 1 46800 Warm 1 46850 Warm 1 48900 Warm
1 48950 Warm 1 461000 Warm 1 421050 Warm 1
321100 Warm 1 421150 Warm 1 381200 Warm 1
281250 Warm 1 281300 Warm 1 280 Warm 2 050
Warm 2 0100 Warm 2 0150 Warm 2 0200 Warm 2 0250
Warm 2 2300 Warm 2 6350 Warm 2 12400 Warm 2 20450
Warm 2 30500 Warm 2 38550 Warm 2 46600 Warm 2
54650 Warm 2 60700 Warm 2 64750 Warm 2 68800 Warm 2
72850 Warm 2 76900 Warm 2 78950 Warm 2 801000 Warm
2 821050 Warm 2 841100 Warm 2 881150 Warm 2
901200 Warm 2 941250 Warm 2 941300 Warm 2 960
Warm 3 050 Warm 3 6100 Warm 3 16150 Warm 3
22200 Warm 3 28250 Warm 3 32300 Warm 3 38350 Warm 3
42400 Warm 3 46450 Warm 3 50500 Warm 3 54550 Warm 3
58600 Warm 3 62650 Warm 3 66700 Warm 3 68750 Warm
3 72800 Warm 3 76850 Warm 3 78900 Warm 3 82950 Warm
3 841000 Warm 3 861050 Warm 3 881100 Warm 3
921150 Warm 3 941200 Warm 3 961250 Warm 3
981300 Warm 3 1020 Warm 4 650 Warm 4 10100 Warm
4 12150 Warm 4 14200 Warm 4 16250 Warm 4 20300 Warm
4 22350 Warm 4 26400 Warm 4 26450 Warm 4 30500 Warm
4 32550 Warm 4 34600 Warm 4 36650 Warm 4 38700
Warm 4 40750 Warm 4 42800 Warm 4 46850 Warm 4
48900 Warm 4 50950 Warm 4 501000 Warm 4 521050
Warm 4 561100 Warm 4 581150 Warm 4 581200 Warm
4 621250 Warm 4 621300 Warm 4 660 Warm 5
050 Warm 5 0100 Warm 5 8150 Warm 5 16200 Warm 5
20250 Warm 5 26300 Warm 5 30350 Warm 5 34400 Warm 5
38450 Warm 5 42500 Warm 5 46550 Warm 5 52600 Warm 5
54650 Warm 5 58700 Warm 5 60750 Warm 5 64800 Warm
5 68850 Warm 5 70900 Warm 5 72950 Warm 5 761000
Warm 5 761050 Warm 5 781100 Warm 5 821150 Warm
5 841200 Warm 5 821250 Warm 5 741300 Warm 5
720 Warm 6 050 Warm 6 2100 Warm 6 10150 Warm 6
16200 Warm 6 22250 Warm 6 26300 Warm 6 34350 Warm 6
34400 Warm 6 38450 Warm 6 42500 Warm 6 44550 Warm
6 48600 Warm 6 52650 Warm 6 54700 Warm 6 58750 Warm
6 60800 Warm 6 62850 Warm 6 66900 Warm 6 68950 Warm
6 701000 Warm 6 721050 Warm 6 761100 Warm 6
781150 Warm 6 801200 Warm 6 821250 Warm 6
841300 Warm 6 840 Warm 7 050 Warm 7 2100 Warm
7 10150 Warm 7 16200 Warm 7 22250 Warm 7 30300 Warm
7 36350 Warm 7 40400 Warm 7 46450 Warm 7 54500 Warm
7 58550 Warm 7 64600 Warm 7 68650 Warm 7 74700 Warm
7 80750 Warm 7 84800 Warm 7 90850 Warm 7 94900
Warm 7 100950 Warm 7 1041000 Warm 7 1081050 Warm
7 1121100 Warm 7 1161150 Warm 7 1201200 Warm
7 1221250 Warm 7 1261300 Warm 7 1280 Warm 8
050 Warm 8 0100 Warm 8 0150 Warm 8 0200 Warm 8
0250 Warm 8 0300 Warm 8 0350 Warm 8 0400 Warm 8
0450 Warm 8 0500 Warm 8 0550 Warm 8 0600 Warm 8
0650 Warm 8 0700 Warm 8 0750 Warm 8 0800 Warm 8
0850 Warm 8 2900 Warm 8 6950 Warm 8 101000 Warm 8
141050 Warm 8 201100 Warm 8 241150 Warm 8
281200 Warm 8 321250 Warm 8 361300 Warm 8 420
Warm 9 050 Warm 9 0100 Warm 9 0150 Warm 9 4200
Warm 9 10250 Warm 9 14300 Warm 9 18350 Warm 9
22400 Warm 9 26450 Warm 9 30500 Warm 9 32550 Warm 9
34600 Warm 9 38650 Warm 9 40700 Warm 9 44750 Warm 9
46800 Warm 9 48850 Warm 9 50900 Warm 9 54950 Warm
9 561000 Warm 9 581050 Warm 9 601100 Warm 9
621150 Warm 9 641200 Warm 9 641250 Warm 9
661300 Warm 9 680 Warm 10 050 Warm 10 0100 Warm
10 0150 Warm 10 0200 Warm 10 0250 Warm 10 0300 Warm 10
4350 Warm 10 12400 Warm 10 20450 Warm 10 28500 Warm 10
34550 Warm 10 38600 Warm 10 44650 Warm 10 48700 Warm
10 52750 Warm 10 56800 Warm 10 60850 Warm 10 64900 Warm
10 64950 Warm 10 681000 Warm 10 701050 Warm 10
741100 Warm 10 761150 Warm 10 761200 Warm 10
781250 Warm 10 801300 Warm 10 800 Warm 11 050
Warm 11 0100 Warm 11 0150 Warm 11 6200 Warm 11 16250
Warm 11 26300 Warm 11 34350 Warm 11 42400 Warm 11
48450 Warm 11 56500 Warm 11 62550 Warm 11 68600 Warm 11
74650 Warm 11 80700 Warm 11 86750 Warm 11 92800 Warm
11 96850 Warm 11 102900 Warm 11 108950 Warm 11 1121000
Warm 11 1161050 Warm 11 1221100 Warm 11 1241150
Warm 11 1301200 Warm 11 1341250 Warm 11 1381300
Warm 11 1420 Warm 12 050 Warm 12 0100 Warm 12 0150
Warm 12 0200 Warm 12 0250 Warm 12 6300 Warm 12 12350
Warm 12 16400 Warm 12 20450 Warm 12 24500 Warm 12
26550 Warm 12 30600 Warm 12 32650 Warm 12 36700 Warm 12
38750 Warm 12 42800 Warm 12 44850 Warm 12 46900 Warm
12 50950 Warm 12 521000 Warm 12 541050 Warm 12
561100 Warm 12 581150 Warm 12 621200 Warm 12
641250 Warm 12 661300 Warm 12 700 Warm 13 050
Warm 13 14100 Warm 13 26150 Warm 13 38200 Warm 13
46250 Warm 13 54300 Warm 13 62350 Warm 13 68400 Warm 13
74450 Warm 13 76500 Warm 13 82550 Warm 13 82600 Warm
13 88650 Warm 13 92700 Warm 13 94750 Warm 13 92800 Warm
13 92850 Warm 13 100900 Warm 13 108950 Warm 13 1041000
Warm 13 1021050 Warm 13 961100 Warm 13 561150
Warm 13 401200 Warm 13 381250 Warm 13 341300 Warm
13 300 Warm 14 050 Warm 14 8100 Warm 14 14150 Warm
14 18200 Warm 14 20250 Warm 14 24300 Warm 14 26350 Warm
14 30400 Warm 14 32450 Warm 14 34500 Warm 14 38550
Warm 14 40600 Warm 14 42650 Warm 14 44700 Warm 14
46750 Warm 14 48800 Warm 14 50850 Warm 14 52900 Warm 14
54950 Warm 14 541000 Warm 14 561050 Warm 14 581100
Warm 14 601150 Warm 14 601200 Warm 14 621250
Warm 14 641300 Warm 14 660 Warm 15 1050 Warm 15
42100 Warm 15 112150 Warm 15 178200 Warm 15 204250 Warm
15 220300 Warm 15 234350 Warm 15 244400 Warm 15 252450
Warm 15 260500 Warm 15 264550 Warm 15 268600 Warm 15
268650 Warm 15 268700 Warm 15 266750 Warm 15 256800 Warm
15 188850 Warm 15 136900 Warm 15 100950 Warm 15 801000
Warm 15 661050 Warm 15 641100 Warm 15 421150
Warm 15 381200 Warm 15 321250 Warm 15 281300 Warm
15 240 Warm 16 050 Warm 16 0100 Warm 16 0150 Warm
16 10200 Warm 16 18250 Warm 16 24300 Warm 16 32350 Warm
16 38400 Warm 16 44450 Warm 16 48500 Warm 16 54550 Warm
16 58600 Warm 16 62650 Warm 16 66700 Warm 16 70750
Warm 16 74800 Warm 16 78850 Warm 16 80900 Warm 16
84950 Warm 16 861000 Warm 16 901050 Warm 16 921100
Warm 16 961150 Warm 16 981200 Warm 16 1021250
Warm 16 1021300 Warm 16 1040 Warm 17 050 Warm 17
0100 Warm 17 0150 Warm 17 0200 Warm 17 0250 Warm 17
0300 Warm 17 4350 Warm 17 10400 Warm 17 14450 Warm 17
20500 Warm 17 24550 Warm 17 28600 Warm 17 32650 Warm 17
36700 Warm 17 40750 Warm 17 44800 Warm 17 46850 Warm
17 50900 Warm 17 54950 Warm 17 561000 Warm 17 601050
Warm 17 621100 Warm 17 641150 Warm 17 681200
Warm 17 701250 Warm 17 741300 Warm 17 760 Warm
18 050 Warm 18 0100 Warm 18 0150 Warm 18 0200 Warm 18
0250 Warm 18 0300 Warm 18 0350 Warm 18 0400 Warm 18
0450 Warm 18 0500 Warm 18 0550 Warm 18 0600 Warm 18
0650 Warm 18 0700 Warm 18 4750 Warm 18 10800 Warm 18
14850 Warm 18 18900 Warm 18 22950 Warm 18 241000 Warm
18 281050 Warm 18 301100 Warm 18 321150 Warm 18
341200 Warm 18 361250 Warm 18 381300 Warm 18 420
Warm 19 050 Warm 19 14100 Warm 19 26150 Warm 19
38200 Warm 19 46250 Warm 19 54300 Warm 19 62350 Warm 19
68400 Warm 19 74450 Warm 19 76500 Warm 19 82550 Warm
19 82600 Warm 19 88650 Warm 19 92700 Warm 19 94750 Warm
19 92800 Warm 19 92850 Warm 19 100900 Warm 19 108950
Warm 19 1041000 Warm 19 1021050 Warm 19 961100
Warm 19 561150 Warm 19 401200 Warm 19 381250 Warm
19 341300 Warm 19 300 Warm 20 1250 Warm 20 22100
Warm 20 28150 Warm 20 34200 Warm 20 42250 Warm 20
48300 Warm 20 54350 Warm 20 60400 Warm 20 66450 Warm 20
70500 Warm 20 74550 Warm 20 78600 Warm 20 82650 Warm
20 88700 Warm 20 92750 Warm 20 96800 Warm 20 98850 Warm
20 102900 Warm 20 104950 Warm 20 1061000 Warm 20
1101050 Warm 20 1121100 Warm 20 1141150 Warm 20
1161200 Warm 20 1181250 Warm 20 1201300 Warm 20
1200 Warm 21 050 Warm 21 0100 Warm 21 14150 Warm 21
26200 Warm 21 32250 Warm 21 38300 Warm 21 44350 Warm 21
48400 Warm 21 52450 Warm 21 54500 Warm 21 58550 Warm
21 60600 Warm 21 62650 Warm 21 66700 Warm 21 68750 Warm
21 70800 Warm 21 72850 Warm 21 74900 Warm 21 76950 Warm
21 761000 Warm 21 781050 Warm 21 801100 Warm 21
801150 Warm 21 801200 Warm 21 821250 Warm 21
821300 Warm 21 820 Warm 22 050 Warm 22 2100 Warm
22 12150 Warm 22 16200 Warm 22 22250 Warm 22 26300 Warm
22 30350 Warm 22 32400 Warm 22 36450 Warm 22 38500 Warm
22 40550 Warm 22 44600 Warm 22 46650 Warm 22 48700 Warm
22 50750 Warm 22 50800 Warm 22 52850 Warm 22 54900
Warm 22 56950 Warm 22 581000 Warm 22 581050 Warm
22 601100 Warm 22 601150 Warm 22 621200 Warm 22
641250 Warm 22 641300 Warm 22 660 Warm 23 050
Warm 23 0100 Warm 23 0150 Warm 23 6200 Warm 23 18250
Warm 23 26300 Warm 23 36350 Warm 23 44400 Warm 23
48450 Warm 23 58500 Warm 23 64550 Warm 23 72600 Warm 23
76650 Warm 23 82700 Warm 23 88750 Warm 23 92800 Warm
23 96850 Warm 23 102900 Warm 23 108950 Warm 23 1141000
Warm 23 1181050 Warm 23 1241100 Warm 23 1281150
Warm 23 1321200 Warm 23 1361250 Warm 23 1401300
Warm 23 1460 Warm 24 050 Warm 24 0100 Warm 24 0150
Warm 24 0200 Warm 24 0250 Warm 24 0300 Warm 24 10350
Warm 24 16400 Warm 24 22450 Warm 24 28500 Warm 24
32550 Warm 24 36600 Warm 24 40650 Warm 24 44700 Warm 24
48750 Warm 24 50800 Warm 24 54850 Warm 24 56900 Warm
24 58950 Warm 24 621000 Warm 24 641050 Warm 24
661100 Warm 24 681150 Warm 24 701200 Warm 24
721250 Warm 24 741300 Warm 24 760 Warm 25 050
Warm 25 6100 Warm 25 10150 Warm 25 14200 Warm 25 18250
Warm 25 20300 Warm 25 24350 Warm 25 26400 Warm 25
28450 Warm 25 30500 Warm 25 34550 Warm 25 36600 Warm 25
36650 Warm 25 40700 Warm 25 42750 Warm 25 42800 Warm
25 46850 Warm 25 46900 Warm 25 48950 Warm 25 501000
Warm 25 501050 Warm 25 521100 Warm 25 541150 Warm
25 561200 Warm 25 561250 Warm 25 581300 Warm
25 600 Warm 26 1050 Warm 26 18100 Warm 26 28150 Warm
26 34200 Warm 26 44250 Warm 26 52300 Warm 26 60350 Warm
26 68400 Warm 26 76450 Warm 26 82500 Warm 26 90550 Warm
26 98600 Warm 26 102650 Warm 26 108700 Warm 26 112750
Warm 26 116800 Warm 26 120850 Warm 26 122900 Warm 26
126950 Warm 26 1261000 Warm 26 1301050 Warm 26
1321100 Warm 26 1341150 Warm 26 1361200 Warm 26
1381250 Warm 26 1381300 Warm 26 1400 Warm 27 050
Warm 27 0100 Warm 27 4150 Warm 27 14200 Warm 27 24250
Warm 27 32300 Warm 27 38350 Warm 27 46400 Warm 27
48450 Warm 27 54500 Warm 27 62550 Warm 27 66600 Warm 27
72650 Warm 27 78700 Warm 27 82750 Warm 27 86800 Warm
27 92850 Warm 27 96900 Warm 27 100950 Warm 27 1061000
Warm 27 1081050 Warm 27 1121100 Warm 27 1161150
Warm 27 1201200 Warm 27 1241250 Warm 27 1281300
Warm 27 1320 Warm 28 1650 Warm 28 28100 Warm 28
42150 Warm 28 56200 Warm 28 70250 Warm 28 82300 Warm 28
94350 Warm 28 106400 Warm 28 114450 Warm 28 126500 Warm
28 130550 Warm 28 138600 Warm 28 144650 Warm 28 150700
Warm 28 154750 Warm 28 156800 Warm 28 158850 Warm 28
164900 Warm 28 162950 Warm 28 1701000 Warm 28 1681050
Warm 28 1701100 Warm 28 1721150 Warm 28 1721200
Warm 28 1721250 Warm 28 1721300 Warm 28 1700 Warm
29 1050 Warm 29 16100 Warm 29 26150 Warm 29 30200 Warm
29 38250 Warm 29 46300 Warm 29 50350 Warm 29 58400
Warm 29 64450 Warm 29 70500 Warm 29 76550 Warm 29
82600 Warm 29 88650 Warm 29 92700 Warm 29 98750 Warm 29
102800 Warm 29 106850 Warm 29 110900 Warm 29 116950 Warm
29 1201000 Warm 29 1221050 Warm 29 1261100 Warm
29 1281150 Warm 29 1281200 Warm 29 1321250 Warm
29 1321300 Warm 29 1320 Warm 30 050 Warm 30 6100
Warm 30 12150 Warm 30 16200 Warm 30 20250 Warm 30
22300 Warm 30 26350 Warm 30 28400 Warm 30 32450 Warm 30
34500 Warm 30 36550 Warm 30 38600 Warm 30 42650 Warm
30 44700 Warm 30 46750 Warm 30 48800 Warm 30 50850 Warm
30 52900 Warm 30 56950 Warm 30 581000 Warm 30 601050
Warm 30 621100 Warm 30 641150 Warm 30 661200
Warm 30 681250 Warm 30 721300 Warm 30 740 Warm
31 050 Warm 31 0100 Warm 31 0150 Warm 31 0200 Warm 31
0250 Warm 31 10300 Warm 31 22350 Warm 31 30400 Warm 31
38450 Warm 31 46500 Warm 31 52550 Warm 31 60600 Warm
31 64650 Warm 31 72700 Warm 31 76750 Warm 31 82800 Warm
31 86850 Warm 31 92900 Warm 31 96950 Warm 31 1001000
Warm 31 1061050 Warm 31 1101100 Warm 31 1141150
Warm 31 1161200 Warm 31 1221250 Warm 31 1241300
Warm 31 1260 Warm 32 850 Warm 32 16100 Warm 32
24150 Warm 32 32200 Warm 32 38250 Warm 32 46300 Warm 32
52350 Warm 32 58400 Warm 32 62450 Warm 32 68500 Warm
32 72550 Warm 32 76600 Warm 32 80650 Warm 32 84700 Warm
32 88750 Warm 32 90800 Warm 32 94850 Warm 32 94900 Warm
32 96950 Warm 32 981000 Warm 32 1001050 Warm 32
1021100 Warm 32 1001150 Warm 32 1001200 Warm 32
961250 Warm 32 761300 Warm 32 620 Warm 33 050
Warm 33 0100 Warm 33 4150 Warm 33 14200 Warm 33 18250
Warm 33 24300 Warm 33 30350 Warm 33 36400 Warm 33
40450 Warm 33 44500 Warm 33 50550 Warm 33 54600 Warm 33
58650 Warm 33 60700 Warm 33 66750 Warm 33 70800 Warm
33 74850 Warm 33 78900 Warm 33 80950 Warm 33 841000
Warm 33 881050 Warm 33 921100 Warm 33 961150 Warm
33 981200 Warm 33 1021250 Warm 33 1041300 Warm
33 1080 Cold 34 050 Cold 34 0100 Cold 34 0150 Cold
34 0200 Cold 34 0250 Cold 34 0300 Cold 34 6350 Cold 34
10400 Cold 34 12450 Cold 34 16500 Cold 34 18550 Cold
34 20600 Cold 34 22650 Cold 34 24700 Cold 34 26750 Cold
34 28800 Cold 34 30850 Cold 34 32900 Cold 34 34950 Cold
34 361000 Cold 34 381050 Cold 34 381100 Cold 34
401150 Cold 34 421200 Cold 34 441250 Cold 34
461300 Cold 34 460 Cold 35 050 Cold 35 0100 Cold
35 4150 Cold 35 10200 Cold 35 16250 Cold 35 20300 Cold
35 24350 Cold 35 28400 Cold 35 32450 Cold 35 34500 Cold
35 38550 Cold 35 42600 Cold 35 44650 Cold 35 48700 Cold
35 50750 Cold 35 54800 Cold 35 56850 Cold 35 58900 Cold
35 60950 Cold 35 621000 Cold 35 661050 Cold 35
681100 Cold 35 681150 Cold 35 721200 Cold 35
721250 Cold 35 741300 Cold 35 760 Cold 36 050
Cold 36 0100 Cold 36 6150 Cold 36 8200 Cold 36 8250
Cold 36 8300 Cold 36 10350 Cold 36 10400 Cold 36 10450
Cold 36 12500 Cold 36 12550 Cold 36 12600 Cold 36
14650 Cold 36 14700 Cold 36 14750 Cold 36 14800 Cold 36
16850 Cold 36 16900 Cold 36 16950 Cold 36 161000 Cold
36 161050 Cold 36 161100 Cold 36 161150 Cold 36
161200 Cold 36 161250 Cold 36 141300 Cold 36 160
Cold 37 050 Cold 37 0100 Cold 37 0150 Cold 37 4200
Cold 37 16250 Cold 37 20300 Cold 37 24350 Cold 37
26400 Cold 37 30450 Cold 37 36500 Cold 37 38550 Cold 37
42600 Cold 37 44650 Cold 37 46700 Cold 37 50750 Cold
37 50800 Cold 37 52850 Cold 37 54900 Cold 37 42950 Cold
37 401000 Cold 37 361050 Cold 37 381100 Cold 37
281150 Cold 37 301200 Cold 37 381250 Cold 37
321300 Cold 37 280 Cold 38 050 Cold 38 0100 Cold
38 0150 Cold 38 0200 Cold 38 0250 Cold 38 0300 Cold 38
0350 Cold 38 0400 Cold 38 0450 Cold 38 0500 Cold 38
2550 Cold 38 10600 Cold 38 16650 Cold 38 20700 Cold 38
24750 Cold 38 26800 Cold 38 28850 Cold 38 32900 Cold 38
34950 Cold 38 361000 Cold 38 401050 Cold 38 421100
Cold 38 441150 Cold 38 461200 Cold 38 481250
Cold 38 501300 Cold 38 540 Cold 39 850 Cold 39
12100 Cold 39 24150 Cold 39 32200 Cold 39 44250 Cold 39
54300 Cold 39 72350 Cold 39 80400 Cold 39 60450 Cold
39 100500 Cold 39 64550 Cold 39 54600 Cold 39 52650 Cold
39 38700 Cold 39 34750 Cold 39 36800 Cold 39 34850 Cold
39 28900 Cold 39 24950 Cold 39 221000 Cold 39
201050 Cold 39 241100 Cold 39 221150 Cold 39
221200 Cold 39 241250 Cold 39 261300 Cold 39 200
Cold 40 050 Cold 40 0100 Cold 40 2150 Cold 40 10200
Cold 40 16250 Cold 40 20300 Cold 40 24350 Cold 40
28400 Cold 40 32450 Cold 40 36500 Cold 40 38550 Cold 40
42600 Cold 40 44650 Cold 40 44700 Cold 40 44750 Cold
40 36800 Cold 40 28850 Cold 40 32900 Cold 40 30950 Cold
40 321000 Cold 40 261050 Cold 40 181100 Cold 40
281150 Cold 40 261200 Cold 40 261250 Cold 40
241300 Cold 40 220 Cold 41 050 Cold 41 0100 Cold
41 4150 Cold 41 14200 Cold 41 20250 Cold 41 26300 Cold
41 30350 Cold 41 36400 Cold 41 40450 Cold 41 42500 Cold
41 46550 Cold 41 50600 Cold 41 54650 Cold 41 58700 Cold
41 60750 Cold 41 64800 Cold 41 68850 Cold 41 70900 Cold
41 74950 Cold 41 761000 Cold 41 801050 Cold 41
821100 Cold 41 841150 Cold 41 881200 Cold 41
901250 Cold 41 921300 Cold 41 960 Cold 42 050
Cold 42 12100 Cold 42 26150 Cold 42 38200 Cold 42
46250 Cold 42 54300 Cold 42 62350 Cold 42 70400 Cold 42
76450 Cold 42 84500 Cold 42 92550 Cold 42 98600 Cold
42 106650 Cold 42 110700 Cold 42 118750 Cold 42 124800
Cold 42 130850 Cold 42 136900 Cold 42 140950 Cold 42
1441000 Cold 42 1521050 Cold 42 1561100 Cold 42
1621150 Cold 42 1661200 Cold 42 1701250 Cold 42
1741300 Cold 42 1800 Cold 43 050 Cold 43 0100 Cold
43 0150 Cold 43 0200 Cold 43 0250 Cold 43 0300 Cold
43 0350 Cold 43 6400 Cold 43 8450 Cold 43 14500 Cold
43 18550 Cold 43 22600 Cold 43 24650 Cold 43 28700 Cold
43 30750 Cold 43 34800 Cold 43 36850 Cold 43 38900 Cold
43 40950 Cold 43 421000 Cold 43 441050 Cold 43
461100 Cold 43 481150 Cold 43 501200 Cold 43
521250 Cold 43 541300 Cold 43 560 Cold 44 050
Cold 44 0100 Cold 44 0150 Cold 44 8200 Cold 44 16250
Cold 44 24300 Cold 44 30350 Cold 44 36400 Cold 44
40450 Cold 44 46500 Cold 44 52550 Cold 44 58600 Cold 44
62650 Cold 44 66700 Cold 44 70750 Cold 44 74800 Cold
44 82850 Cold 44 84900 Cold 44 94950 Cold 44 1021000
Cold 44 1061050 Cold 44 1121100 Cold 44 1161150
Cold 44 1221200 Cold 44 1201250 Cold 44 1241300
Cold 44 1300 Cold 45 050 Cold 45 0100 Cold 45 0150
Cold 45 0200 Cold 45 8250 Cold 45 14300 Cold 45 20350
Cold 45 24400 Cold 45 30450 Cold 45 34500 Cold 45
40550 Cold 45 44600 Cold 45 48650 Cold 45 52700 Cold 45
56750 Cold 45 60800 Cold 45 64850 Cold 45 70900 Cold
45 74950 Cold 45 781000 Cold 45 821050 Cold 45
861100 Cold 45 921150 Cold 45 941200 Cold 45
981250 Cold 45 1021300 Cold 45 1060 Cold 46 050
Cold 46 0100 Cold 46 0150 Cold 46 0200 Cold 46 0250
Cold 46 0300 Cold 46 0350 Cold 46 0400 Cold 46 0450
Cold 46 0500 Cold 46 0550 Cold 46 0600 Cold 46 0650
Cold 46 0700 Cold 46 0750 Cold 46 0800 Cold 46 0850
Cold 46 2900 Cold 46 2950 Cold 46 21000 Cold 46
21050 Cold 46 41100 Cold 46 21150 Cold 46 41200
Cold 46 41250 Cold 46 41300 Cold 46 40 Cold 47
050 Cold 47 0100 Cold 47 0150 Cold 47 0200 Cold 47
0250 Cold 47 0300 Cold 47 0350 Cold 47 0400 Cold 47
4450 Cold 47 10500 Cold 47 16550 Cold 47 24600 Cold 47
28650 Cold 47 36700 Cold 47 40750 Cold 47 44800 Cold 47
48850 Cold 47 52900 Cold 47 56950 Cold 47 601000 Cold
47 641050 Cold 47 661100 Cold 47 701150 Cold 47
721200 Cold 47 761250 Cold 47 781300 Cold 47 780
Cold 48 050 Cold 48 0100 Cold 48 0150 Cold 48 0200
Cold 48 8250 Cold 48 10300 Cold 48 18350 Cold 48 22400
Cold 48 24450 Cold 48 30500 Cold 48 18550 Cold 48
26600 Cold 48 34650 Cold 48 26700 Cold 48 26750 Cold 48
30800 Cold 48 32850 Cold 48 28900 Cold 48 30950 Cold
48 381000 Cold 48 181050 Cold 48 301100 Cold 48
221150 Cold 48 261200 Cold 48 221250 Cold 48
181300 Cold 48 280 Cold 49 050 Cold 49 0100 Cold
49 0150 Cold 49 0200 Cold 49 0250 Cold 49 0300 Cold 49
0350 Cold 49 2400 Cold 49 6450 Cold 49 8500 Cold 49
12550 Cold 49 18600 Cold 49 18650 Cold 49 22700 Cold 49
24750 Cold 49 28800 Cold 49 28850 Cold 49 30900 Cold
49 32950 Cold 49 341000 Cold 49 301050 Cold 49
421100 Cold 49 341150 Cold 49 401200 Cold 49
341250 Cold 49 401300 Cold 49 320 Cold 50 050
Cold 50 0100 Cold 50 0150 Cold 50 0200 Cold 50 0250
Cold 50 0300 Cold 50 0350 Cold 50 4400 Cold 50 14450
Cold 50 20500 Cold 50 28550 Cold 50 34600 Cold 50
40650 Cold 50 46700 Cold 50 52750 Cold 50 58800 Cold 50
64850 Cold 50 68900 Cold 50 74950 Cold 50 781000 Cold
50 821050 Cold 50 861100 Cold 50 921150 Cold 50
981200 Cold 50 1021250 Cold 50 1041300 Cold 50
1060 Cold 51 050 Cold 51 0100 Cold 51 2150 Cold 51
8200 Cold 51 14250 Cold 51 18300 Cold 51 22350 Cold 51
28400 Cold 51 32450 Cold 51 36500 Cold 51 40550 Cold 51
44600 Cold 51 48650 Cold 51 52700 Cold 51 54750 Cold
51 58800 Cold 51 62850 Cold 51 68900 Cold 51 72950 Cold
51 741000 Cold 51 781050 Cold 51 801100 Cold 51
841150 Cold 51 881200 Cold 51 921250 Cold 51
961300 Cold 51 980 Cold 52 050 Cold 52 0100 Cold
52 0150 Cold 52 0200 Cold 52 0250 Cold 52 0300 Cold 52
2350 Cold 52 4400 Cold 52 8450 Cold 52 16500 Cold 52
22550 Cold 52 32600 Cold 52 34650 Cold 52 40700 Cold 52
40750 Cold 52 58800 Cold 52 64850 Cold 52 72900 Cold
52 76950 Cold 52 841000 Cold 52 901050 Cold 52
961100 Cold 52 1001150 Cold 52 1061200 Cold 52
1121250 Cold 52 1181300 Cold 52 1220 Cold 53 050
Cold 53 0100 Cold 53 0150 Cold 53 0200 Cold 53 2250
Cold 53 12300 Cold 53 20350 Cold 53 26400 Cold 53
34450 Cold 53 38500 Cold 53 44550 Cold 53 50600 Cold 53
54650 Cold 53 60700 Cold 53 66750 Cold 53 70800 Cold
53 72850 Cold 53 80900 Cold 53 82950 Cold 53 881000
Cold 53 921050 Cold 53 961100 Cold 53 1001150
Cold 53 1041200 Cold 53 1081250 Cold 53 1121300
Cold 53 1160 Cold 54 050 Cold 54 0100 Cold 54 0150
Cold 54 0200 Cold 54 0250 Cold 54 2300 Cold 54 8350
Cold 54 16400 Cold 54 22450 Cold 54 24500 Cold 54
32550 Cold 54 36600 Cold 54 36650 Cold 54 42700 Cold 54
50750 Cold 54 56800 Cold 54 58850 Cold 54 64900 Cold
54 66950 Cold 54 721000 Cold 54 741050 Cold 54
781100 Cold 54 801150 Cold 54 841200 Cold 54
861250 Cold 54 901300 Cold 54 940 Cold 55 050
Cold 55 0100 Cold 55 0150 Cold 55 2200 Cold 55 10250
Cold 55 18300 Cold 55 26350 Cold 55 30400 Cold 55
38450 Cold 55 42500 Cold 55 48550 Cold 55 52600 Cold 55
58650 Cold 55 64700 Cold 55 68750 Cold 55 74800 Cold
55 78850 Cold 55 84900 Cold 55 88950 Cold 55 941000
Cold 55 981050 Cold 55 1001100 Cold 55 1041150
Cold 55 1081200 Cold 55 1101250 Cold 55 1141300
Cold 55 1180 Cold 56 050 Cold 56 0100 Cold 56 0150
Cold 56 0200 Cold 56 0250 Cold 56 0300 Cold 56 0350
Cold 56 8400 Cold 56 14450 Cold 56 20500 Cold 56 24550
Cold 56 28600 Cold 56 30650 Cold 56 36700 Cold 56
40750 Cold 56 44800 Cold 56 46850 Cold 56 50900 Cold 56
54950 Cold 56 581000 Cold 56 601050 Cold 56 621100
Cold 56 661150 Cold 56 681200 Cold 56 701250
Cold 56 721300 Cold 56 760 Cold 57 050 Cold 57
0100 Cold 57 0150 Cold 57 0200 Cold 57 0250 Cold 57
0300 Cold 57 0350 Cold 57 0400 Cold 57 2450 Cold 57
10500 Cold 57 12550 Cold 57 14600 Cold 57 16650 Cold 57
16700 Cold 57 20750 Cold 57 20800 Cold 57 22850 Cold
57 24900 Cold 57 26950 Cold 57 261000 Cold 57 281050
Cold 57 301100 Cold 57 321150 Cold 57 321200
Cold 57 341250 Cold 57 361300 Cold 57 36
*Renato Filogonio*
http://lattes.cnpq.br/0339937732653268
On Sat, Jul 27, 2024 at 12:13?AM Bede-Fazekas ?kos <bfalevlist at gmail.com>
wrote:
Dear Renato, I've never used this package and you did not attached a reproducible example, so I cannot test my suggestion. Nevertheless, please try converting the column "i" to factor before calling the t2way() and mcp2atm() functions, and replace "as.factor(i)" with "i" in the model formulas: khg$i <- as.factor(khg$i) t2way(formula = fr ~ t * i, data = khg) mcp2atm(fr ~ t * i, data = khg) Since you read the khg.txt file with stringsAsFactors = TRUE parameterization, the factor conversion can be skipped if "i" contained text. If it contained numbers, then the conversion is needed. HTH, ?kos
______________
?kos Bede-Fazekas
Centre for Ecological Research, Hungary
2024. 07. 27. 0:23 keltez?ssel, Renato Filogonio ?rta:
Dear list,
I used a robust two-way ANOVA using the WRS2 package (R v.4.4.1), using
the
following code as suggested by Mair and Wilcox (2020)
library(WRS2)
khg<-read.table("khg.txt", h = T, dec = ".", sep = "\t",
stringsAsFactors=T, na.strings = "NA")
t2way(fr ~ t * as.factor(i), data = khg)
This worked fine, so it returned:
Call:
t2way(formula = fr ~ t * as.factor(i), data = khg)
value p.value
t 133.0420 0.001
as.factor(i) 3317.8926 0.001
t:as.factor(i) 150.6804 0.001
When I run the pairwise comparison using mcp2atm(), I get:
mcp2atm(fr ~ t * as.factor(i), data = khg)
Error in `[.data.frame`(data, variable.names(mf)) :
undefined columns selected
So, it is basically the same code for the same dataframe but another
function from the same package, but now I get an error message. I tried
to
look at the pairwiseRobustTest() function from the package 'rcompanion'
but
it is now [Defunct!] as in the last version of 'rcompanion', so I am
afraid
I am running out of options... Any thoughts on how to circumvent this
problem?
I have posted the dataset here:
https://stackoverflow.com/questions/78800048/error-using-mcp2atm-function-for-robust-pairwise-comparisons-undefined-columns
Thanks in advance!
Renato
*Renato Filogonio*
http://lattes.cnpq.br/0339937732653268
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