Message-ID: <492049E4.8010909@umn.edu>
Date: 2008-11-16T16:27:16Z
From: Christopher Chizinski
Subject: residual with protest in vegan
I am using protest (in vegan) to assess the concordance between NMDS
scores, as shown below:
fishbug.fit <- protest(scores.bug, scores.fish,permutations = 9999)
I would like to get the average residuals from protest. When I use
residuals(),
resids.fit<-residuals(fishbug.fit)
which residuals is this returning to me? Are these the average
residuals from the 9999 permutations or are these the residuals from the
most recent permutation?
Thanks for any help,
--Chris