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life forms spectrum analysis

On Mon, 16 Mar 2015, Ludovico Frate wrote:

            
Ludovico,

   Let me paraphrase what you wrote to see if I understand. You have a number
of plots each populated with a variety of plant species, and you are
interested in only two of those species. You ask if there are meaningful
differences in the relative abundances of each of your two species of
interest in the plots.

   If this is correct (or close to correct), I suggest that you look at these
as compositions (the packages compositions, robCompositions, and
zCompositions each offer useful functions). The number (or percent ground
cover) of the species other than your two are immaterial. Assuming that the
relative proportions of each of your two species are the response
(dependent) variables, and you have potential explanatory (independent,
predictor) variables, then you can perform regression analyses on the
compositions.

Hope this helps,

Rich