Three-way mixed (orthogonal and nested factors) ANOVA for unbalanced designs?

Hi all,

I want to run an ANOVA model considering two fixed orthogonal factors 
(Habitat and Depth) and a spatial random factor Site nested in the 
interaction between these fixed factors, with the difficulty that my 
dataset is unbalanced (some replicates missing in several sites), any 
advice on the codes to use to specify linear model?

Thank you very much,

Jose

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Jos? Antonio Garc?a Charton

Departamento de Ecolog?a e Hidrolog?a
Universidad de Murcia
Campus de Espinardo
30100 Murcia (Espa?a)

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