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Three-way mixed (orthogonal and nested factors) ANOVA for unbalanced designs?

1 message · Jose Antonio García Charton

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Hi all,

I want to run an ANOVA model considering two fixed orthogonal factors 
(Habitat and Depth) and a spatial random factor Site nested in the 
interaction between these fixed factors, with the difficulty that my 
dataset is unbalanced (some replicates missing in several sites), any 
advice on the codes to use to specify linear model?

Thank you very much,

Jose