Hello, I am trying to use ordicluster in a MDS graphic with the following code, where bondad.sinespecies comes from goodness() and sinespecies.mds is the metaMDS() result: plot(sinespecies.mds,display='sites',type='t') orditorp(sinespecies.mds,'sites',col='#B45F04') points(sinespecies.mds, display='sites', col='#0489B1', cex= 2*bondad.sinespecies/mean(bondad.sinespecies)) ordicluster(sinespecies.mds,clusterbeta) Then, there is no problem with the graphic, since I use hclust() result (clusterbeta), the problem is that I want to use the AU/BP values obtained from pvclust() and I don't know how to use those values with ordicluster, if it can be done. Bye and thanks for you time, Olmo.
ordiclust with AU/BP values
1 message · Olmo