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envfit calculation
2 messages · dan clune, Gavin Simpson
14 days later
On Mon, 2011-12-05 at 09:39 -0800, dan clune wrote:
Hello R-Ecologists, I'm looking for clarification on how vectors in function envfit are calculated. I understand how to use the function, it is pretty straightforward. But after reading the documentation I am still wondering exactly how the vectors are calculated internally by the function.
It is covered in Jongman, ter Braak & van Tongeren (1995) Data Analysis in Community and Landscape Ecology. Cambridge University Press. It is in the ordination chapter. I'm away from my copy at the moment so can't point you to it directly I'm afraid. However, that might not help you understand the R code as IIRC Jari has some pretty efficient code to do fitting. If that was your aim, it might help to speak to Jari on the vegan help or discussion lists on r-forge.r-project.org. I've been meaning to write a blog post about envfit for a wee while, but that would only be from the point of view of what the method/idea is doing, not from understanding the codes Jari used to implement it. HTH G
Can anyone point me toward a more detailed explanation of the calculations? Thanks for any help, Dan [[alternative HTML version deleted]]
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