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R 2.7.2 Issues
3 messages · Josh Stumpf, Tyler Smith, Gavin Simpson
"Josh Stumpf" <artibeus at gmail.com> writes:
I'm not sure if this question is more appropriate here or in the Ubuntu forums, but I'm willing to try anything at this point.
Anything to do with R and Ubuntu (which is a derivative of Debian) is most appropriately dealt with on the r-sig-debian mailing list: https://stat.ethz.ch/mailman/listinfo/r-sig-debian The package maintainers read that list and usually respond very promptly when issues arise. Cheers, Tyler
This morning I upgraded to 2.7.2 via the Ubuntu package repository, and now when I go to run R via the command line it fails to start, giving the following error: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/jstumpf/R/i486-pc-linux-gnu-library/2.7/kernlab/libs/kernlab.so': libRlapack.so: cannot open shared object file: No such file or directory Fatal error: unable to restore saved data in .RData Has anyone else encountered this? Any solutions? [[alternative HTML version deleted]]
The purpose of models is not to fit the data but to sharpen the questions.
--Samuel Karlin
On Wed, 2008-08-27 at 12:36 -0400, Josh Stumpf wrote:
I'm not sure if this question is more appropriate here or in the Ubuntu forums, but I'm willing to try anything at this point. This morning I upgraded to 2.7.2 via the Ubuntu package repository, and now when I go to run R via the command line it fails to start, giving the following error: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/jstumpf/R/i486-pc-linux-gnu-library/2.7/kernlab/libs/kernlab.so': libRlapack.so: cannot open shared object file: No such file or directory Fatal error: unable to restore saved data in .RData Has anyone else encountered this? Any solutions?
Hmm, Kernlab is not a recommended package in R, so I suspect R is loading a previously saved workspace that contains an object or environment that requires kernlab and that has gotten broken since you updated. Does entering the following at the console start R: R --vanilla If so, at least you can get R working. Even if this works, follow Tyler's advice and ask on the debian SIG for R as I suspect you'll want to solve the kernlab issue. HTH G
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%