For those of you that may not have heard about RMark and are interested in mark-recapture problems, it is an R interface to the software MARK. It enables models to be built with formula like you do with glm rather than creating the design matrix by hand with the MARK interface. All of the model fitting is done in MARK (with mark.exe) and cannot be used separately from it. That is why I have not put it on CRAN and instead have chosen to make it available from Evan Cooch's MARK website (http://www.phidot.org/software/mark/rmark/). You can find 115 pages of documentation in an Appendix of the Cooch and White electronic book available from the same website. Also, as with most R packages RMark contains documentation for each function. RMark supports most but not all models in MARK. If you find that a model you want is not supported contact me and I'll add it in. I plan to include all of the models at some stage If you want help with anything in RMark, you can post here or to the MARK listserver also available from Evan's MARK website. With regard to nest survival, I agree with Jessi's comment that you should use what works for you. I believe Jay Rotella has a paper out that shows alternate ways of fitting nest survival data. Jessi, if you or anyone else wants to set up one of the examples (mallard or killdeer) that accompany RMark for nest survival with the logistic-exposure link function I'll include it with the package. It would provide a nice tutorial for folks doing that type of work. I work with marine mammals so obviously I don't do much in the way of nest survival analysis. regards --jeff
What is RMark?
1 message · Jeff Laake