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Rebuild against FlexiBLAS

5 messages · Tom Callaway, Elliott Sales de Andrade, Iñaki Ucar

Original
Iñaki Ucar
# 
Hi,

R has been built against FlexiBLAS in rawhide [1, 2]. These are the R
packages that need to be rebuilt:

R-ape-0:5.4-2.fc33.x86_64
R-expm-0:0.999.4-7.fc33.x86_64
R-gee-0:4.13.20-4.fc33.x86_64
R-gss-0:2.2.2-3.fc33.x86_64
R-igraph-0:1.2.5-3.fc33.x86_64
R-msm-0:1.6.8-5.fc33.x86_64
R-preprocessCore-0:1.50.0-4.fc33.x86_64
R-qtl-0:1.46.2-4.fc33.x86_64
R-quadprog-0:1.5.8-5.fc33.x86_64

Could somebody with provenpackager superpowers bump the release and
rebuild them, please? Thanks in advance!

[1] https://src.fedoraproject.org/rpms/R/pull-request/5
[2] https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
Tom Callaway
# 
I'm on it.

Thanks,
Tom
On Mon, Aug 10, 2020 at 8:24 AM I?aki Ucar <iucar at fedoraproject.org> wrote:

            

      
      
      
    

        

      
      
    

        

  
  


  


      

    

    

      
      

        


  

        

      Tom Callaway
    

    

      
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These should all be finished now.

Thanks,
Tom

        
On Mon, Aug 10, 2020 at 10:05 AM Tom Callaway <spotrh at gmail.com> wrote:

        

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

  
  


  


      

    

    

      
      

        


  

        

      Elliott Sales de Andrade
    

    

      
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Hi I?aki,

        
On Mon, 10 Aug 2020 at 08:24, I?aki Ucar <iucar at fedoraproject.org> wrote:

            

      
      
      
    

        
I noticed that R-sfsmisc is failing on koschei, and it appears to be
related to this BLAS change:

https://koschei.fedoraproject.org/build/8692462

Any ideas here?

            

      
      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Iñaki Ucar
    

    

      
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On Tue, 11 Aug 2020 at 08:47, Elliott Sales de Andrade

        
<quantum.analyst at gmail.com> wrote:

            

      
      
      
    

        
It seems like a poorly designed test to me, because it requires a
narrow number of iterations (27:28) to pass. It appears to fail only
in i686 (maybe other 32-bit architectures too?) with the new BLAS
default (which FlexiBLAS sets to openblas-openmp). It would be
interesting to see how many iterations actually took (less or more
than 27:28?; I doubt it, but maybe there's some bug in
openblas-openmp?).

Anyway, these tests were most probably set using the reference BLAS
implementation, so you can just

export FLEXIBLAS=netlib

in the %check section, which solves the issue in that platform:
https://koji.fedoraproject.org/koji/taskinfo?taskID=49072314