CentOS 7 issues with pdf manual / tex conversion

6 messages · R P Herrold, Tom Callaway, Dirk Eddelbuettel

Tue, May 29, 2018 1:17 PM #

On a CentOS 7 machine, I am at a loss with respect to an inability to run a
full R CMD check as anything involving tex files ends in tears.

We followed the README at CRAN and installed a large number of tex-live
packages on this machine. But when a manual is created, we end up with what
follows below.  Here, I chopped some of the error messages, the key seems to
be 'Insufficient extension fonts' which gets repeated a bit.

I have been using latex for a long time, but I can't make heads and tails of
it.  Any idea?

Dirk


$ R CMD Rd2pdf pkgKitten        ## just because I know the manual builds
Hmm ... looks like a package
Converting Rd files to LaTeX 
Creating pdf output from LaTeX ...
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'Rd2.tex' failed.
LaTeX errors:
! Math formula deleted: Insufficient extension fonts.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
! Emergency stop.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
!  ==> Fatal error occurred, no output PDF file produced!
Output:
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
 restricted \write18 enabled.
entering extended mode
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, lo
aded.
(./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
[...]


(/usr/share/R/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 366.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 366.

) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))
(/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def))
Writing index file Rd2.idx
No file Rd2.aux.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
! Math formula deleted: Insufficient extension fonts.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
? 
! Emergency stop.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on Rd2.log.
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'Rd2.tex' failed.
LaTeX errors:
! Math formula deleted: Insufficient extension fonts.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
! Emergency stop.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
!  ==> Fatal error occurred, no output PDF file produced!
Output:
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
 restricted \write18 enabled.
entering extended mode
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, lo
aded.
(./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/R/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 366.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 366.

) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))
(/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def))
Writing index file Rd2.idx
(./Rd2.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./Rd2.out) (./Rd2.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./Rd2.toc)
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
! Math formula deleted: Insufficient extension fonts.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
? 
! Emergency stop.
\@iiiparbox ...bm@#3\endcsname }\if at pboxsw \m at th $
                                                  \fi \@end at tempboxa 
l.34 ...itten} function.}{pkgKitten.Rdash.package}
                                                  
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on Rd2.log.
Error in running tools::texi2pdf()

http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

R P Herrold

Tue, May 29, 2018 1:37 PM #

On Tue, 29 May 2018, Dirk Eddelbuettel wrote:

Hi, Dirk

Have fun at the upcoming conference at UIC

I seem to have 56 font packages installed under CentOS 7 
locally, but then I work pretty carefully to cull them down

What is the specific 'leaf node' package you are trying to 
attain.   Long ago and far away, I packaged several hundred, 
inspired by your Debian effort, and I may have a working .spec 
file about

with my regards,

-- Russ herrold

Dirk Eddelbuettel

Tue, May 29, 2018 1:53 PM #

On 29 May 2018 at 16:37, R P Herrold wrote:

| On Tue, 29 May 2018, Dirk Eddelbuettel wrote:

| 
| > On a CentOS 7 machine, I am at a loss with respect to an inability to run a
| > full R CMD check as anything involving tex files ends in tears.
| 
| Hi, Dirk
| 
| Have fun at the upcoming conference at UIC
| 
| I seem to have 56 font packages installed under CentOS 7 
| locally, but then I work pretty carefully to cull them down
| 
| What is the specific 'leaf node' package you are trying to 

I noticed it with a local, not-public package -- but it appears to apply with
any source package. I replicated with pkgKitten straight off CRAN and after
checking that it has a six page manual there.  Here, I get an aborted (!!)
source file, same happens with the local, non-public package:

-----------------------------------------------------------------------------
\documentclass[a4paper]{book}
\usepackage[times,hyper]{Rd}
\usepackage{makeidx}
\usepackage[latin1]{inputenc} % @SET ENCODING@
% \usepackage{graphicx} % @USE GRAPHICX@
\makeindex{}
\begin{document}
\chapter*{}
\begin{center}
{\textbf{\huge \R{} documentation}} \par\bigskip{{\Large of \file{pkgKitten\_0.1.4.tar.gz}}}
\par\bigskip{\large \today}
\end{center}
-----------------------------------------------------------------------------

Note that it ends on \end{center}, not \end{document}.

Dirk

| attain.   Long ago and far away, I packaged several hundred, 
| inspired by your Debian effort, and I may have a working .spec 
| file about
| 
| with my regards,
| 
| -- Russ herrold

http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

Tom Callaway

Wed, May 30, 2018 8:34 AM #

On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote:

I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I can
pull the pkgKitten source down, and run R CMD Rd2pdf pkgKitten without
issue:

[spot at localhost ~]$ tar xf pkgKitten_0.1.4.tar.gz
[spot at localhost ~]$ R CMD Rd2pdf pkgKitten
Hmm ... looks like a package
Converting Rd files to LaTeX
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
 restricted \write18 enabled.
entering extended mode
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang,
nohyphenation, lo
aded.
(./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/R/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line
366.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line
366.

) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))
(/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def))
Writing index file Rd2.idx
No file Rd2.aux.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
[1{/usr/share/texlive/t
exmf/fonts/map/pdftex/updmap/pdftex.map}]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 65--65
 []\T1/pcr/m/n/10 kitten(name = "anRpackage", path = ".", author,
maintainer, e
mail,[]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [2]
No file Rd2.ind.
[3] (./Rd2.aux)

Package rerunfilecheck Warning: File `Rd2.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)pdfTeX warning
(dest): name
{Rfn.email.Rul.address} has been referenced but does not exist, replaced
by a f
ixed one

pdfTeX warning (dest): name{Rfn.fullname} has been referenced but does
not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.package.skeleton} has been referenced
but does
not exist, replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/
texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/ur
w/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.
pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share
/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on Rd2.pdf (3 pages, 69080 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2013] (kpathsea + Thai support).
Scanning input file Rd2.idx....done (9 entries accepted, 0 rejected).
Sorting entries....done (36 comparisons).
Generating output file Rd2.ind....done (26 lines written, 0 warnings).
Output written in Rd2.ind.
Transcript written in Rd2.ilg.
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
 restricted \write18 enabled.
entering extended mode
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang,
nohyphenation, lo
aded.
(./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/R/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
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dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helv
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This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
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entering extended mode
LaTeX2e <2011/06/27>
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Saving output to ?pkgKitten.pdf? ...
Done

*****

Do you have a ~/.texlive2013 ? If so, try deleting it and retrying.

Here's the list of texlive components I have on my CentOS 7 system:

texlive-ae-svn15878.1.4-38.el7.noarch
texlive-algorithms-svn15878.0.1-38.el7.noarch
texlive-amscls-svn29207.0-38.el7.noarch
texlive-amsfonts-svn29208.3.04-38.el7.noarch
texlive-amsmath-svn29327.2.14-38.el7.noarch
texlive-anysize-svn15878.0-38.el7.noarch
texlive-attachfile-svn21866.v1.5b-38.el7.noarch
texlive-avantgar-svn28614.0-38.el7.noarch
texlive-babelbib-svn25245.1.31-38.el7.noarch
texlive-babel-svn24756.3.8m-38.el7.noarch
texlive-base-2012-38.20130427_r30134.el7.noarch
texlive-beamer-svn29349.3.26-38.el7.noarch
texlive-bera-svn20031.0-38.el7.noarch
texlive-beton-svn15878.0-38.el7.noarch
texlive-bibtex-bin-svn26509.0-38.20130427_r30134.el7.x86_64
texlive-bibtex-svn26689.0.99d-38.el7.noarch
texlive-bookman-svn28614.0-38.el7.noarch
texlive-booktabs-svn15878.1.61803-38.el7.noarch
texlive-breakurl-svn15878.1.30-38.el7.noarch
texlive-caption-svn29026.3.3__2013_02_03_-38.el7.noarch
texlive-carlisle-svn18258.0-38.el7.noarch
texlive-charter-svn15878.0-38.el7.noarch
texlive-chngcntr-svn17157.1.0a-38.el7.noarch
texlive-cite-svn19955.5.3-38.el7.noarch
texlive-cmap-svn26568.0-38.el7.noarch
texlive-cmextra-svn14075.0-38.el7.noarch
texlive-cm-super-svn15878.0-38.el7.noarch
texlive-cm-svn29581.0-38.el7.noarch
texlive-collection-basic-svn26314.0-38.20130427_r30134.el7.noarch
texlive-collection-documentation-base-svn17091.0-38.20130427_r30134.el7.noarch
texlive-collection-fontsrecommended-svn28082.0-38.20130427_r30134.el7.noarch
texlive-collection-latexrecommended-svn25795.0-38.20130427_r30134.el7.noarch
texlive-collection-latex-svn25030.0-38.20130427_r30134.el7.noarch
texlive-colortbl-svn25394.v1.0a-38.el7.noarch
texlive-courier-svn28614.0-38.el7.noarch
texlive-crop-svn15878.1.5-38.el7.noarch
texlive-csquotes-svn24393.5.1d-38.el7.noarch
texlive-ctable-svn26694.1.23-38.el7.noarch
texlive-currfile-svn29012.0.7b-38.el7.noarch
texlive-dvipdfm-bin-svn13663.0-38.20130427_r30134.el7.noarch
texlive-dvipdfm-svn26689.0.13.2d-38.el7.noarch
texlive-dvipdfmx-bin-svn26509.0-38.20130427_r30134.el7.x86_64
texlive-dvipdfmx-def-svn15878.0-38.el7.noarch
texlive-dvipdfmx-svn26765.0-38.el7.noarch
texlive-dvips-bin-svn26509.0-38.20130427_r30134.el7.x86_64
texlive-dvips-svn29585.0-38.el7.noarch
texlive-ec-svn25033.1.0-38.el7.noarch
texlive-enctex-svn28602.0-38.el7.noarch
texlive-enumitem-svn24146.3.5.2-38.el7.noarch
texlive-epsf-svn21461.2.7.4-38.el7.noarch
texlive-eso-pic-svn21515.2.0c-38.el7.noarch
texlive-etex-pkg-svn15878.2.0-38.el7.noarch
texlive-etex-svn22198.2.1-38.el7.noarch
texlive-etoolbox-svn20922.2.1-38.el7.noarch
texlive-euler-svn17261.2.5-38.el7.noarch
texlive-euro-svn22191.1.1-38.el7.noarch
texlive-eurosym-svn17265.1.4_subrfix-38.el7.noarch
texlive-extsizes-svn17263.1.4a-38.el7.noarch
texlive-fancybox-svn18304.1.4-38.el7.noarch
texlive-fancyhdr-svn15878.3.1-38.el7.noarch
texlive-fancyref-svn15878.0.9c-38.el7.noarch
texlive-fancyvrb-svn18492.2.8-38.el7.noarch
texlive-filecontents-svn24250.1.3-38.el7.noarch
texlive-filehook-svn24280.0.5d-38.el7.noarch
texlive-fix2col-svn17133.0-38.el7.noarch
texlive-float-svn15878.1.3d-38.el7.noarch
texlive-fontspec-svn29412.v2.3a-38.el7.noarch
texlive-footmisc-svn23330.5.5b-38.el7.noarch
texlive-fpl-svn15878.1.002-38.el7.noarch
texlive-fp-svn15878.0-38.el7.noarch
texlive-geometry-svn19716.5.6-38.el7.noarch
texlive-glyphlist-svn28576.0-38.el7.noarch
texlive-graphics-svn25405.1.0o-38.el7.noarch
texlive-gsftopk-bin-svn26509.0-38.20130427_r30134.el7.x86_64
texlive-gsftopk-svn26689.1.19.2-38.el7.noarch
texlive-helvetic-svn28614.0-38.el7.noarch
texlive-hyperref-svn28213.6.83m-38.el7.noarch
texlive-hyphen-base-svn29197.0-38.el7.noarch
texlive-hyph-utf8-svn29641.0-38.el7.noarch
texlive-ifetex-svn24853.1.2-38.el7.noarch
texlive-ifluatex-svn26725.1.3-38.el7.noarch
texlive-ifxetex-svn19685.0.5-38.el7.noarch
texlive-index-svn24099.4.1beta-38.el7.noarch
texlive-jknapltx-svn19440.0-38.el7.noarch
texlive-kastrup-svn15878.0-38.el7.noarch
texlive-koma-script-svn27255.3.11b-38.el7.noarch
texlive-kpathsea-bin-svn27347.0-38.20130427_r30134.el7.x86_64
texlive-kpathsea-lib-2012-38.20130427_r30134.el7.x86_64
texlive-kpathsea-svn28792.0-38.el7.noarch
texlive-l3experimental-svn29361.SVN_4467-38.el7.noarch
texlive-l3kernel-svn29409.SVN_4469-38.el7.noarch
texlive-l3packages-svn29361.SVN_4467-38.el7.noarch
texlive-latex-bin-bin-svn14050.0-38.20130427_r30134.el7.noarch
texlive-latex-bin-svn26689.0-38.el7.noarch
texlive-latexconfig-svn28991.0-38.el7.noarch
texlive-latex-fonts-svn28888.0-38.el7.noarch
texlive-latex-svn27907.0-38.el7.noarch
texlive-listings-svn15878.1.4-38.el7.noarch
texlive-lm-math-svn29044.1.958-38.el7.noarch
texlive-lm-svn28119.2.004-38.el7.noarch
texlive-ltxmisc-svn21927.0-38.el7.noarch
texlive-lua-alt-getopt-svn29349.0.7.0-38.el7.noarch
texlive-lualatex-math-svn29346.1.2-38.el7.noarch
texlive-luaotfload-bin-svn18579.0-38.20130427_r30134.el7.noarch
texlive-luaotfload-svn26718.1.26-38.el7.noarch
texlive-luatexbase-svn22560.0.31-38.el7.noarch
texlive-luatex-bin-svn26912.0-38.20130427_r30134.el7.x86_64
texlive-luatex-svn26689.0.70.1-38.el7.noarch
texlive-makeindex-bin-svn26509.0-38.20130427_r30134.el7.x86_64
texlive-makeindex-svn26689.2.12-38.el7.noarch
texlive-marginnote-svn25880.v1.1i-38.el7.noarch
texlive-marvosym-svn29349.2.2a-38.el7.noarch
texlive-mathpazo-svn15878.1.003-38.el7.noarch
texlive-mdwtools-svn15878.1.05.4-38.el7.noarch
texlive-memoir-svn21638.3.6j_patch_6.0g-38.el7.noarch
texlive-metafont-bin-svn26912.0-38.20130427_r30134.el7.x86_64
texlive-metafont-svn26689.2.718281-38.el7.noarch
texlive-metalogo-svn18611.0.12-38.el7.noarch
texlive-mflogo-svn17487.0-38.el7.noarch
texlive-mfnfss-svn19410.0-38.el7.noarch
texlive-mfware-bin-svn26509.0-38.20130427_r30134.el7.x86_64
texlive-mfware-svn26689.0-38.el7.noarch
texlive-mh-svn29420.0-38.el7.noarch
texlive-microtype-svn29392.2.5-38.el7.noarch
texlive-misc-svn24955.0-38.el7.noarch
texlive-mparhack-svn15878.1.4-38.el7.noarch
texlive-mptopdf-bin-svn18674.0-38.20130427_r30134.el7.noarch
texlive-mptopdf-svn26689.0-38.el7.noarch
texlive-ms-svn24467.0-38.el7.noarch
texlive-multido-svn18302.1.42-38.el7.noarch
texlive-natbib-svn20668.8.31b-38.el7.noarch
texlive-ncntrsbk-svn28614.0-38.el7.noarch
texlive-ntgclass-svn15878.0-38.el7.noarch
texlive-oberdiek-svn26725.0-38.el7.noarch
texlive-palatino-svn28614.0-38.el7.noarch
texlive-paralist-svn15878.2.3b-38.el7.noarch
texlive-parallel-svn15878.0-38.el7.noarch
texlive-parskip-svn19963.2.0-38.el7.noarch
texlive-pdfpages-svn27574.0.4t-38.el7.noarch
texlive-pdftex-bin-svn27321.0-38.20130427_r30134.el7.x86_64
texlive-pdftex-def-svn22653.0.06d-38.el7.noarch
texlive-pdftex-svn29585.1.40.11-38.el7.noarch
texlive-pgf-svn22614.2.10-38.el7.noarch
texlive-plain-svn26647.0-38.el7.noarch
texlive-powerdot-svn25656.1.4i-38.el7.noarch
texlive-psfrag-svn15878.3.04-38.el7.noarch
texlive-pslatex-svn16416.0-38.el7.noarch
texlive-psnfss-svn23394.9.2a-38.el7.noarch
texlive-pspicture-svn15878.0-38.el7.noarch
texlive-pst-3d-svn17257.1.10-38.el7.noarch
texlive-pst-blur-svn15878.2.0-38.el7.noarch
texlive-pst-coil-svn24020.1.06-38.el7.noarch
texlive-pst-eps-svn15878.1.0-38.el7.noarch
texlive-pst-fill-svn15878.1.01-38.el7.noarch
texlive-pst-grad-svn15878.1.06-38.el7.noarch
texlive-pst-math-svn20176.0.61-38.el7.noarch
texlive-pst-node-svn27799.1.25-38.el7.noarch
texlive-pst-plot-svn28729.1.44-38.el7.noarch
texlive-pstricks-add-svn28750.3.59-38.el7.noarch
texlive-pstricks-svn29678.2.39-38.el7.noarch
texlive-pst-slpe-svn24391.1.31-38.el7.noarch
texlive-pst-text-svn15878.1.00-38.el7.noarch
texlive-pst-tree-svn24142.1.12-38.el7.noarch
texlive-pxfonts-svn15878.0-38.el7.noarch
texlive-qstest-svn15878.0-38.el7.noarch
texlive-rcs-svn15878.0-38.el7.noarch
texlive-rotating-svn16832.2.16b-38.el7.noarch
texlive-rsfs-svn15878.0-38.el7.noarch
texlive-sansmath-svn17997.1.1-38.el7.noarch
texlive-sauerj-svn15878.0-38.el7.noarch
texlive-section-svn20180.0-38.el7.noarch
texlive-seminar-svn18322.1.5-38.el7.noarch
texlive-sepnum-svn20186.2.0-38.el7.noarch
texlive-setspace-svn24881.6.7a-38.el7.noarch
texlive-showexpl-svn27790.v0.3j-38.el7.noarch
texlive-soul-svn15878.2.4-38.el7.noarch
texlive-subfig-svn15878.1.3-38.el7.noarch
texlive-symbol-svn28614.0-38.el7.noarch
texlive-tetex-bin-svn27344.0-38.20130427_r30134.el7.noarch
texlive-tetex-svn29585.3.0-38.el7.noarch
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texlive-tex-gyre-math-svn29045.0-38.el7.noarch
texlive-tex-gyre-svn18651.2.004-38.el7.noarch
texlive-texlive.infra-bin-svn22566.0-38.20130427_r30134.el7.x86_64
texlive-texlive.infra-svn28217.0-38.el7.noarch
texlive-tex-svn26689.3.1415926-38.el7.noarch
texlive-textcase-svn15878.0-38.el7.noarch
texlive-thumbpdf-bin-svn6898.0-38.20130427_r30134.el7.noarch
texlive-thumbpdf-svn26689.3.15-38.el7.noarch
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texlive-tipa-svn29349.1.3-38.el7.noarch
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texlive-txfonts-svn15878.0-38.el7.noarch
texlive-type1cm-svn21820.0-38.el7.noarch
texlive-typehtml-svn17134.0-38.el7.noarch
texlive-ucs-svn27549.2.1-38.el7.noarch
texlive-underscore-svn18261.0-38.el7.noarch
texlive-unicode-math-svn29413.0.7d-38.el7.noarch
texlive-url-svn16864.3.2-38.el7.noarch
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texlive-wasysym-svn15878.2.0-38.el7.noarch
texlive-xcolor-svn15878.2.11-38.el7.noarch
texlive-xdvi-bin-svn26509.0-38.20130427_r30134.el7.x86_64
texlive-xdvi-svn26689.22.85-38.el7.noarch
texlive-xkeyval-svn27995.2.6a-38.el7.noarch
texlive-xunicode-svn23897.0.981-38.el7.noarch
texlive-zapfchan-svn28614.0-38.el7.noarch
texlive-zapfding-svn28614.0-38.el7.noarch

Dirk Eddelbuettel

Wed, May 30, 2018 9:10 AM #

Tom,

On 30 May 2018 at 11:34, Tom Callaway wrote:

| On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote:

| > I noticed it with a local, not-public package -- but it appears to apply with
| > any source package. I replicated with pkgKitten straight off CRAN and after
| > checking that it has a six page manual there.
| 
| I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I can
| pull the pkgKitten source down, and run R CMD Rd2pdf pkgKitten without
| issue:

Thank you. That is the expected behaviour and also what I see on Ubuntu /
Debian. We may be missing a font metrics or font package.  Will check
locally.

Dirk
| 
| [spot at localhost ~]$ tar xf pkgKitten_0.1.4.tar.gz
| [spot at localhost ~]$ R CMD Rd2pdf pkgKitten
| Hmm ... looks like a package
| Converting Rd files to LaTeX
| Creating pdf output from LaTeX ...
| 
| This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
|  restricted \write18 enabled.
| entering extended mode
| LaTeX2e <2011/06/27>
| Babel <v3.8m> and hyphenation patterns for english, dumylang,
| nohyphenation, lo
| aded.
| (./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
| Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
| (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
| (/usr/share/R/texmf/tex/latex/Rd.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
| (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
| (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
| (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
| (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
| (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
| (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
| 
| Package hyperref Message: Driver (autodetected): hpdftex.
| 
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
| 
| Package hyperref Warning: Option `hyperindex' has already been used,
| (hyperref)                setting the option has no effect on input line
| 366.
| 
| 
| Package hyperref Warning: Option `pagebackref' has already been used,
| (hyperref)                setting the option has no effect on input line
| 366.
| 
| ) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
| (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))
| (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def))
| Writing index file Rd2.idx
| No file Rd2.aux.
| (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
| (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
| [Loading MPS to PDF converter (version 2006.09.02).]
| ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
| [1{/usr/share/texlive/t
| exmf/fonts/map/pdftex/updmap/pdftex.map}]
| Overfull \hbox (0.78088pt too wide) in paragraph at lines 65--65
|  []\T1/pcr/m/n/10 kitten(name = "anRpackage", path = ".", author,
| maintainer, e
| mail,[]
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [2]
| No file Rd2.ind.
| [3] (./Rd2.aux)
| 
| Package rerunfilecheck Warning: File `Rd2.out' has changed.
| (rerunfilecheck)                Rerun to get outlines right
| (rerunfilecheck)                or use package `bookmark'.
| 
|  )
| (see the transcript file for additional information)pdfTeX warning
| (dest): name
| {Rfn.email.Rul.address} has been referenced but does not exist, replaced
| by a f
| ixed one
| 
| pdfTeX warning (dest): name{Rfn.fullname} has been referenced but does
| not exis
| t, replaced by a fixed one
| 
| pdfTeX warning (dest): name{Rfn.package.skeleton} has been referenced
| but does
| not exist, replaced by a fixed one
| 
| {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/
| texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fo
| nts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/ur
| w/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.
| pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share
| /texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
| Output written on Rd2.pdf (3 pages, 69080 bytes).
| Transcript written on Rd2.log.
| This is makeindex, version 2.15 [TeX Live 2013] (kpathsea + Thai support).
| Scanning input file Rd2.idx....done (9 entries accepted, 0 rejected).
| Sorting entries....done (36 comparisons).
| Generating output file Rd2.ind....done (26 lines written, 0 warnings).
| Output written in Rd2.ind.
| Transcript written in Rd2.ilg.
| This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
|  restricted \write18 enabled.
| entering extended mode
| LaTeX2e <2011/06/27>
| Babel <v3.8m> and hyphenation patterns for english, dumylang,
| nohyphenation, lo
| aded.
| (./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
| Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
| (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
| (/usr/share/R/texmf/tex/latex/Rd.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
| (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
| (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
| (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
| (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
| (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
| (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
| 
| Package hyperref Message: Driver (autodetected): hpdftex.
| 
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
| 
| Package hyperref Warning: Option `hyperindex' has already been used,
| (hyperref)                setting the option has no effect on input line
| 366.
| 
| 
| Package hyperref Warning: Option `pagebackref' has already been used,
| (hyperref)                setting the option has no effect on input line
| 366.
| 
| ) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
| (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))
| (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def))
| Writing index file Rd2.idx
| (./Rd2.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
| (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
| [Loading MPS to PDF converter (version 2006.09.02).]
| ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
| (./Rd2.out) (./Rd2.out)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./Rd2.toc)
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
| [1{/usr/share/texlive/t
| exmf/fonts/map/pdftex/updmap/pdftex.map}]
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
| Overfull \hbox (0.78088pt too wide) in paragraph at lines 65--65
|  []\T1/pcr/m/n/10 kitten(name = "anRpackage", path = ".", author,
| maintainer, e
| mail,[]
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [2] (./Rd2.ind [3]
| [4]) (./Rd2.aux)
| 
| Package rerunfilecheck Warning: File `Rd2.out' has changed.
| (rerunfilecheck)                Rerun to get outlines right
| (rerunfilecheck)                or use package `bookmark'.
| 
|  )
| (see the transcript file for additional information)pdfTeX warning
| (dest): name
| {Rfn.email.Rul.address} has been referenced but does not exist, replaced
| by a f
| ixed one
| 
| pdfTeX warning (dest): name{Rfn.fullname} has been referenced but does
| not exis
| t, replaced by a fixed one
| 
| pdfTeX warning (dest): name{Rfn.package.skeleton} has been referenced
| but does
| not exist, replaced by a fixed one
| 
| {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/
| texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-
| dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
| pe1/urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helv
| etic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb
| ></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/te
| xlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dis
| t/fonts/type1/urw/times/utmri8a.pfb>
| Output written on Rd2.pdf (4 pages, 85455 bytes).
| Transcript written on Rd2.log.
| This is makeindex, version 2.15 [TeX Live 2013] (kpathsea + Thai support).
| Scanning input file Rd2.idx....done (9 entries accepted, 0 rejected).
| Sorting entries....done (36 comparisons).
| Generating output file Rd2.ind....done (26 lines written, 0 warnings).
| Output written in Rd2.ind.
| Transcript written in Rd2.ilg.
| This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
|  restricted \write18 enabled.
| entering extended mode
| LaTeX2e <2011/06/27>
| Babel <v3.8m> and hyphenation patterns for english, dumylang,
| nohyphenation, lo
| aded.
| (./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
| Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
| (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
| (/usr/share/R/texmf/tex/latex/Rd.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
| (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
| (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
| (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
| (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
| (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
| (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
| 
| Package hyperref Message: Driver (autodetected): hpdftex.
| 
| (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
| (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
| 
| Package hyperref Warning: Option `hyperindex' has already been used,
| (hyperref)                setting the option has no effect on input line
| 366.
| 
| 
| Package hyperref Warning: Option `pagebackref' has already been used,
| (hyperref)                setting the option has no effect on input line
| 366.
| 
| ) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
| (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
| (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
| (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))
| (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def))
| Writing index file Rd2.idx
| (./Rd2.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
| (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
| [Loading MPS to PDF converter (version 2006.09.02).]
| ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
| (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
| (./Rd2.out) (./Rd2.out)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)
| (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./Rd2.toc)
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
| [1{/usr/share/texlive/t
| exmf/fonts/map/pdftex/updmap/pdftex.map}]
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
| Overfull \hbox (0.78088pt too wide) in paragraph at lines 65--65
|  []\T1/pcr/m/n/10 kitten(name = "anRpackage", path = ".", author,
| maintainer, e
| mail,[]
| (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [2] (./Rd2.ind [3]
| [4]) (./Rd2.aux) )
| (see the transcript file for additional information)pdfTeX warning
| (dest): name
| {Rfn.email.Rul.address} has been referenced but does not exist, replaced
| by a f
| ixed one
| 
| pdfTeX warning (dest): name{Rfn.fullname} has been referenced but does
| not exis
| t, replaced by a fixed one
| 
| pdfTeX warning (dest): name{Rfn.package.skeleton} has been referenced
| but does
| not exist, replaced by a fixed one
| 
| {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/
| texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-
| dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
| pe1/urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helv
| etic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb
| ></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/te
| xlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dis
| t/fonts/type1/urw/times/utmri8a.pfb>
| Output written on Rd2.pdf (4 pages, 85995 bytes).
| Transcript written on Rd2.log.
| Saving output to ?pkgKitten.pdf? ...
| Done
| 
| *****
| 
| Do you have a ~/.texlive2013 ? If so, try deleting it and retrying.
| 
| Here's the list of texlive components I have on my CentOS 7 system:
| 
| texlive-ae-svn15878.1.4-38.el7.noarch
| texlive-algorithms-svn15878.0.1-38.el7.noarch
| texlive-amscls-svn29207.0-38.el7.noarch
| texlive-amsfonts-svn29208.3.04-38.el7.noarch
| texlive-amsmath-svn29327.2.14-38.el7.noarch
| texlive-anysize-svn15878.0-38.el7.noarch
| texlive-attachfile-svn21866.v1.5b-38.el7.noarch
| texlive-avantgar-svn28614.0-38.el7.noarch
| texlive-babelbib-svn25245.1.31-38.el7.noarch
| texlive-babel-svn24756.3.8m-38.el7.noarch
| texlive-base-2012-38.20130427_r30134.el7.noarch
| texlive-beamer-svn29349.3.26-38.el7.noarch
| texlive-bera-svn20031.0-38.el7.noarch
| texlive-beton-svn15878.0-38.el7.noarch
| texlive-bibtex-bin-svn26509.0-38.20130427_r30134.el7.x86_64
| texlive-bibtex-svn26689.0.99d-38.el7.noarch
| texlive-bookman-svn28614.0-38.el7.noarch
| texlive-booktabs-svn15878.1.61803-38.el7.noarch
| texlive-breakurl-svn15878.1.30-38.el7.noarch
| texlive-caption-svn29026.3.3__2013_02_03_-38.el7.noarch
| texlive-carlisle-svn18258.0-38.el7.noarch
| texlive-charter-svn15878.0-38.el7.noarch
| texlive-chngcntr-svn17157.1.0a-38.el7.noarch
| texlive-cite-svn19955.5.3-38.el7.noarch
| texlive-cmap-svn26568.0-38.el7.noarch
| texlive-cmextra-svn14075.0-38.el7.noarch
| texlive-cm-super-svn15878.0-38.el7.noarch
| texlive-cm-svn29581.0-38.el7.noarch
| texlive-collection-basic-svn26314.0-38.20130427_r30134.el7.noarch
| texlive-collection-documentation-base-svn17091.0-38.20130427_r30134.el7.noarch
| texlive-collection-fontsrecommended-svn28082.0-38.20130427_r30134.el7.noarch
| texlive-collection-latexrecommended-svn25795.0-38.20130427_r30134.el7.noarch
| texlive-collection-latex-svn25030.0-38.20130427_r30134.el7.noarch
| texlive-colortbl-svn25394.v1.0a-38.el7.noarch
| texlive-courier-svn28614.0-38.el7.noarch
| texlive-crop-svn15878.1.5-38.el7.noarch
| texlive-csquotes-svn24393.5.1d-38.el7.noarch
| texlive-ctable-svn26694.1.23-38.el7.noarch
| texlive-currfile-svn29012.0.7b-38.el7.noarch
| texlive-dvipdfm-bin-svn13663.0-38.20130427_r30134.el7.noarch
| texlive-dvipdfm-svn26689.0.13.2d-38.el7.noarch
| texlive-dvipdfmx-bin-svn26509.0-38.20130427_r30134.el7.x86_64
| texlive-dvipdfmx-def-svn15878.0-38.el7.noarch
| texlive-dvipdfmx-svn26765.0-38.el7.noarch
| texlive-dvips-bin-svn26509.0-38.20130427_r30134.el7.x86_64
| texlive-dvips-svn29585.0-38.el7.noarch
| texlive-ec-svn25033.1.0-38.el7.noarch
| texlive-enctex-svn28602.0-38.el7.noarch
| texlive-enumitem-svn24146.3.5.2-38.el7.noarch
| texlive-epsf-svn21461.2.7.4-38.el7.noarch
| texlive-eso-pic-svn21515.2.0c-38.el7.noarch
| texlive-etex-pkg-svn15878.2.0-38.el7.noarch
| texlive-etex-svn22198.2.1-38.el7.noarch
| texlive-etoolbox-svn20922.2.1-38.el7.noarch
| texlive-euler-svn17261.2.5-38.el7.noarch
| texlive-euro-svn22191.1.1-38.el7.noarch
| texlive-eurosym-svn17265.1.4_subrfix-38.el7.noarch
| texlive-extsizes-svn17263.1.4a-38.el7.noarch
| texlive-fancybox-svn18304.1.4-38.el7.noarch
| texlive-fancyhdr-svn15878.3.1-38.el7.noarch
| texlive-fancyref-svn15878.0.9c-38.el7.noarch
| texlive-fancyvrb-svn18492.2.8-38.el7.noarch
| texlive-filecontents-svn24250.1.3-38.el7.noarch
| texlive-filehook-svn24280.0.5d-38.el7.noarch
| texlive-fix2col-svn17133.0-38.el7.noarch
| texlive-float-svn15878.1.3d-38.el7.noarch
| texlive-fontspec-svn29412.v2.3a-38.el7.noarch
| texlive-footmisc-svn23330.5.5b-38.el7.noarch
| texlive-fpl-svn15878.1.002-38.el7.noarch
| texlive-fp-svn15878.0-38.el7.noarch
| texlive-geometry-svn19716.5.6-38.el7.noarch
| texlive-glyphlist-svn28576.0-38.el7.noarch
| texlive-graphics-svn25405.1.0o-38.el7.noarch
| texlive-gsftopk-bin-svn26509.0-38.20130427_r30134.el7.x86_64
| texlive-gsftopk-svn26689.1.19.2-38.el7.noarch
| texlive-helvetic-svn28614.0-38.el7.noarch
| texlive-hyperref-svn28213.6.83m-38.el7.noarch
| texlive-hyphen-base-svn29197.0-38.el7.noarch
| texlive-hyph-utf8-svn29641.0-38.el7.noarch
| texlive-ifetex-svn24853.1.2-38.el7.noarch
| texlive-ifluatex-svn26725.1.3-38.el7.noarch
| texlive-ifxetex-svn19685.0.5-38.el7.noarch
| texlive-index-svn24099.4.1beta-38.el7.noarch
| texlive-jknapltx-svn19440.0-38.el7.noarch
| texlive-kastrup-svn15878.0-38.el7.noarch
| texlive-koma-script-svn27255.3.11b-38.el7.noarch
| texlive-kpathsea-bin-svn27347.0-38.20130427_r30134.el7.x86_64
| texlive-kpathsea-lib-2012-38.20130427_r30134.el7.x86_64
| texlive-kpathsea-svn28792.0-38.el7.noarch
| texlive-l3experimental-svn29361.SVN_4467-38.el7.noarch
| texlive-l3kernel-svn29409.SVN_4469-38.el7.noarch
| texlive-l3packages-svn29361.SVN_4467-38.el7.noarch
| texlive-latex-bin-bin-svn14050.0-38.20130427_r30134.el7.noarch
| texlive-latex-bin-svn26689.0-38.el7.noarch
| texlive-latexconfig-svn28991.0-38.el7.noarch
| texlive-latex-fonts-svn28888.0-38.el7.noarch
| texlive-latex-svn27907.0-38.el7.noarch
| texlive-listings-svn15878.1.4-38.el7.noarch
| texlive-lm-math-svn29044.1.958-38.el7.noarch
| texlive-lm-svn28119.2.004-38.el7.noarch
| texlive-ltxmisc-svn21927.0-38.el7.noarch
| texlive-lua-alt-getopt-svn29349.0.7.0-38.el7.noarch
| texlive-lualatex-math-svn29346.1.2-38.el7.noarch
| texlive-luaotfload-bin-svn18579.0-38.20130427_r30134.el7.noarch
| texlive-luaotfload-svn26718.1.26-38.el7.noarch
| texlive-luatexbase-svn22560.0.31-38.el7.noarch
| texlive-luatex-bin-svn26912.0-38.20130427_r30134.el7.x86_64
| texlive-luatex-svn26689.0.70.1-38.el7.noarch
| texlive-makeindex-bin-svn26509.0-38.20130427_r30134.el7.x86_64
| texlive-makeindex-svn26689.2.12-38.el7.noarch
| texlive-marginnote-svn25880.v1.1i-38.el7.noarch
| texlive-marvosym-svn29349.2.2a-38.el7.noarch
| texlive-mathpazo-svn15878.1.003-38.el7.noarch
| texlive-mdwtools-svn15878.1.05.4-38.el7.noarch
| texlive-memoir-svn21638.3.6j_patch_6.0g-38.el7.noarch
| texlive-metafont-bin-svn26912.0-38.20130427_r30134.el7.x86_64
| texlive-metafont-svn26689.2.718281-38.el7.noarch
| texlive-metalogo-svn18611.0.12-38.el7.noarch
| texlive-mflogo-svn17487.0-38.el7.noarch
| texlive-mfnfss-svn19410.0-38.el7.noarch
| texlive-mfware-bin-svn26509.0-38.20130427_r30134.el7.x86_64
| texlive-mfware-svn26689.0-38.el7.noarch
| texlive-mh-svn29420.0-38.el7.noarch
| texlive-microtype-svn29392.2.5-38.el7.noarch
| texlive-misc-svn24955.0-38.el7.noarch
| texlive-mparhack-svn15878.1.4-38.el7.noarch
| texlive-mptopdf-bin-svn18674.0-38.20130427_r30134.el7.noarch
| texlive-mptopdf-svn26689.0-38.el7.noarch
| texlive-ms-svn24467.0-38.el7.noarch
| texlive-multido-svn18302.1.42-38.el7.noarch
| texlive-natbib-svn20668.8.31b-38.el7.noarch
| texlive-ncntrsbk-svn28614.0-38.el7.noarch
| texlive-ntgclass-svn15878.0-38.el7.noarch
| texlive-oberdiek-svn26725.0-38.el7.noarch
| texlive-palatino-svn28614.0-38.el7.noarch
| texlive-paralist-svn15878.2.3b-38.el7.noarch
| texlive-parallel-svn15878.0-38.el7.noarch
| texlive-parskip-svn19963.2.0-38.el7.noarch
| texlive-pdfpages-svn27574.0.4t-38.el7.noarch
| texlive-pdftex-bin-svn27321.0-38.20130427_r30134.el7.x86_64
| texlive-pdftex-def-svn22653.0.06d-38.el7.noarch
| texlive-pdftex-svn29585.1.40.11-38.el7.noarch
| texlive-pgf-svn22614.2.10-38.el7.noarch
| texlive-plain-svn26647.0-38.el7.noarch
| texlive-powerdot-svn25656.1.4i-38.el7.noarch
| texlive-psfrag-svn15878.3.04-38.el7.noarch
| texlive-pslatex-svn16416.0-38.el7.noarch
| texlive-psnfss-svn23394.9.2a-38.el7.noarch
| texlive-pspicture-svn15878.0-38.el7.noarch
| texlive-pst-3d-svn17257.1.10-38.el7.noarch
| texlive-pst-blur-svn15878.2.0-38.el7.noarch
| texlive-pst-coil-svn24020.1.06-38.el7.noarch
| texlive-pst-eps-svn15878.1.0-38.el7.noarch
| texlive-pst-fill-svn15878.1.01-38.el7.noarch
| texlive-pst-grad-svn15878.1.06-38.el7.noarch
| texlive-pst-math-svn20176.0.61-38.el7.noarch
| texlive-pst-node-svn27799.1.25-38.el7.noarch
| texlive-pst-plot-svn28729.1.44-38.el7.noarch
| texlive-pstricks-add-svn28750.3.59-38.el7.noarch
| texlive-pstricks-svn29678.2.39-38.el7.noarch
| texlive-pst-slpe-svn24391.1.31-38.el7.noarch
| texlive-pst-text-svn15878.1.00-38.el7.noarch
| texlive-pst-tree-svn24142.1.12-38.el7.noarch
| texlive-pxfonts-svn15878.0-38.el7.noarch
| texlive-qstest-svn15878.0-38.el7.noarch
| texlive-rcs-svn15878.0-38.el7.noarch
| texlive-rotating-svn16832.2.16b-38.el7.noarch
| texlive-rsfs-svn15878.0-38.el7.noarch
| texlive-sansmath-svn17997.1.1-38.el7.noarch
| texlive-sauerj-svn15878.0-38.el7.noarch
| texlive-section-svn20180.0-38.el7.noarch
| texlive-seminar-svn18322.1.5-38.el7.noarch
| texlive-sepnum-svn20186.2.0-38.el7.noarch
| texlive-setspace-svn24881.6.7a-38.el7.noarch
| texlive-showexpl-svn27790.v0.3j-38.el7.noarch
| texlive-soul-svn15878.2.4-38.el7.noarch
| texlive-subfig-svn15878.1.3-38.el7.noarch
| texlive-symbol-svn28614.0-38.el7.noarch
| texlive-tetex-bin-svn27344.0-38.20130427_r30134.el7.noarch
| texlive-tetex-svn29585.3.0-38.el7.noarch
| texlive-tex-bin-svn26912.0-38.20130427_r30134.el7.x86_64
| texlive-texconfig-bin-svn27344.0-38.20130427_r30134.el7.noarch
| texlive-texconfig-svn29349.0-38.el7.noarch
| texlive-tex-gyre-math-svn29045.0-38.el7.noarch
| texlive-tex-gyre-svn18651.2.004-38.el7.noarch
| texlive-texlive.infra-bin-svn22566.0-38.20130427_r30134.el7.x86_64
| texlive-texlive.infra-svn28217.0-38.el7.noarch
| texlive-tex-svn26689.3.1415926-38.el7.noarch
| texlive-textcase-svn15878.0-38.el7.noarch
| texlive-thumbpdf-bin-svn6898.0-38.20130427_r30134.el7.noarch
| texlive-thumbpdf-svn26689.3.15-38.el7.noarch
| texlive-times-svn28614.0-38.el7.noarch
| texlive-tipa-svn29349.1.3-38.el7.noarch
| texlive-tools-svn26263.0-38.el7.noarch
| texlive-txfonts-svn15878.0-38.el7.noarch
| texlive-type1cm-svn21820.0-38.el7.noarch
| texlive-typehtml-svn17134.0-38.el7.noarch
| texlive-ucs-svn27549.2.1-38.el7.noarch
| texlive-underscore-svn18261.0-38.el7.noarch
| texlive-unicode-math-svn29413.0.7d-38.el7.noarch
| texlive-url-svn16864.3.2-38.el7.noarch
| texlive-utopia-svn15878.0-38.el7.noarch
| texlive-varwidth-svn24104.0.92-38.el7.noarch
| texlive-wasy-svn15878.0-38.el7.noarch
| texlive-wasysym-svn15878.2.0-38.el7.noarch
| texlive-xcolor-svn15878.2.11-38.el7.noarch
| texlive-xdvi-bin-svn26509.0-38.20130427_r30134.el7.x86_64
| texlive-xdvi-svn26689.22.85-38.el7.noarch
| texlive-xkeyval-svn27995.2.6a-38.el7.noarch
| texlive-xunicode-svn23897.0.981-38.el7.noarch
| texlive-zapfchan-svn28614.0-38.el7.noarch
| texlive-zapfding-svn28614.0-38.el7.noarch

http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

Dirk Eddelbuettel

Wed, May 30, 2018 1:18 PM #

On 30 May 2018 at 11:10, Dirk Eddelbuettel wrote:

| 
| Tom,
|

| On 30 May 2018 at 11:34, Tom Callaway wrote:

| | On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote:

| | > I noticed it with a local, not-public package -- but it appears to apply with
| | > any source package. I replicated with pkgKitten straight off CRAN and after
| | > checking that it has a six page manual there.
| | 
| | I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I can
| | pull the pkgKitten source down, and run R CMD Rd2pdf pkgKitten without
| | issue:
| 
| Thank you. That is the expected behaviour and also what I see on Ubuntu /
| Debian. We may be missing a font metrics or font package.  Will check
| locally.

Weird. We have the exact same packages, yet mine bonk.  I wonder what else
could be going on.  Maybe it is write permission on the cache font metrics or
something like that...

Dirk

http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org