In this presentation: http://www.rinfinance.com/agenda/2013/talk/AlexiosGhalanos.pdf there is a bit of code on page 16 (and copied below) that loads a library called racd. I cannot seem to find racd. Can someone point me in the right direction? Thanks, Mark library(racd) library(rugarch) data(sp500ret) spec = acdspec(variance.model=list(model=?sGARCH?, variance.targeting=TRUE), distribution.model=list(model=?nig?,skewOrder=c(1,0,1), shapeOrder=c(1,1,1),skewmodel=?quad?,shapemodel=?pwl?)) mod = acdfit(spec, sp500ret, solver=?msoptim?,solver.control=list(restarts=5))
Time Varying Higher Moments - racd?
10 messages · Joshua Ulrich, Alexios Ghalanos, Mark Knecht
See p15 of the presentation. -- Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com
On Tue, May 27, 2014 at 1:54 PM, Mark Knecht <markknecht at gmail.com> wrote:
In this presentation: http://www.rinfinance.com/agenda/2013/talk/AlexiosGhalanos.pdf there is a bit of code on page 16 (and copied below) that loads a library called racd. I cannot seem to find racd. Can someone point me in the right direction? Thanks, Mark library(racd) library(rugarch) data(sp500ret) spec = acdspec(variance.model=list(model=?sGARCH?, variance.targeting=TRUE), distribution.model=list(model=?nig?,skewOrder=c(1,0,1), shapeOrder=c(1,1,1),skewmodel=?quad?,shapemodel=?pwl?)) mod = acdfit(spec, sp500ret, solver=?msoptim?,solver.control=list(restarts=5))
_______________________________________________ R-SIG-Finance at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-finance -- Subscriber-posting only. If you want to post, subscribe first. -- Also note that this is not the r-help list where general R questions should go.
Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
On 27/05/2014 19:56, Joshua Ulrich wrote:
See p15 of the presentation. -- Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com On Tue, May 27, 2014 at 1:54 PM, Mark Knecht <markknecht at gmail.com> wrote:
In this presentation: http://www.rinfinance.com/agenda/2013/talk/AlexiosGhalanos.pdf there is a bit of code on page 16 (and copied below) that loads a library called racd. I cannot seem to find racd. Can someone point me in the right direction? Thanks, Mark library(racd) library(rugarch) data(sp500ret) spec = acdspec(variance.model=list(model=?sGARCH?, variance.targeting=TRUE), distribution.model=list(model=?nig?,skewOrder=c(1,0,1), shapeOrder=c(1,1,1),skewmodel=?quad?,shapemodel=?pwl?)) mod = acdfit(spec, sp500ret, solver=?msoptim?,solver.control=list(restarts=5))
_______________________________________________ R-SIG-Finance at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-finance -- Subscriber-posting only. If you want to post, subscribe first. -- Also note that this is not the r-help list where general R questions should go.
_______________________________________________ R-SIG-Finance at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-finance -- Subscriber-posting only. If you want to post, subscribe first. -- Also note that this is not the r-help list where general R questions should go.
On Tue, May 27, 2014 at 12:59 PM, alexios ghalanos <alexios at 4dscape.com> wrote:
Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
Thanks Alexios. I started reading that based on Pierre's response but I'm hung up: 1) I needed the fftw package to install but it wouldn't as it was not finding fftw3. I then found fftw-3.3.3-r2 in Gentoo portage and think I got past that problem. 2) I'm now just trying to install all the packages shown on yor r-downloads page but rmgarch won't install apparently due to (I think) Latex issues. I got as far as failing due to something called texi2dvi which I found and installed from portage again, but now I have this problem due to a missing appendix.sty file I think. Thanks for any pointers into what I'm doing wrong here. Cheers, Mark R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(devtools)
Loading required package: devtools
Attaching package: ?devtools?
The following objects are masked from ?package:utils?:
?, help
The following object is masked from ?package:base?:
system.file
install_bitbucket("rmgarch","alexiosg")
Installing bitbucket repo(s) rmgarch/master from alexiosg Downloading master.zip from https://bitbucket.org/alexiosg/rmgarch/get/master.zip Installing package from /tmp/Rtmpwt0Tnh/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rmgarch '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925/DESCRIPTION' ... OK * preparing 'rmgarch': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_rmgarch_models.tex' failed. LaTeX errors: ! LaTeX Error: File `appendix.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.9 \usepackage [round]{natbib}^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: <Anonymous> -> texi2pdf -> texi2dvi Execution halted Error: Command failed (1)
Hi Mark, 1. Have a look at the "install_bitbucket" documentation. There is the option I believe to pass some extra arguments to "install" via '...'. Specifically the "dependencies" (logical) and "build_vignettes" arguments. 2. You need to have the "appendix" package in your latex installation (see the documentation of your linux flavor on how to do this). 3. fftw on CRAN builds ok for everything but OSX Mavericks...I may remove it going forward and use the base implementation to avoid too many problematic dependencies, but would welcome any feedback on speed comparisons. Best, Alexios
On 27/05/2014 21:43, Mark Knecht wrote:
On Tue, May 27, 2014 at 12:59 PM, alexios ghalanos <alexios at 4dscape.com> wrote:
Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
Thanks Alexios. I started reading that based on Pierre's response but I'm hung up: 1) I needed the fftw package to install but it wouldn't as it was not finding fftw3. I then found fftw-3.3.3-r2 in Gentoo portage and think I got past that problem. 2) I'm now just trying to install all the packages shown on yor r-downloads page but rmgarch won't install apparently due to (I think) Latex issues. I got as far as failing due to something called texi2dvi which I found and installed from portage again, but now I have this problem due to a missing appendix.sty file I think. Thanks for any pointers into what I'm doing wrong here. Cheers, Mark R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(devtools)
Loading required package: devtools
Attaching package: ?devtools?
The following objects are masked from ?package:utils?:
?, help
The following object is masked from ?package:base?:
system.file
install_bitbucket("rmgarch","alexiosg")
Installing bitbucket repo(s) rmgarch/master from alexiosg Downloading master.zip from https://bitbucket.org/alexiosg/rmgarch/get/master.zip Installing package from /tmp/Rtmpwt0Tnh/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rmgarch '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925/DESCRIPTION' ... OK * preparing 'rmgarch': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_rmgarch_models.tex' failed. LaTeX errors: ! LaTeX Error: File `appendix.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.9 \usepackage [round]{natbib}^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: <Anonymous> -> texi2pdf -> texi2dvi Execution halted Error: Command failed (1)
Thanks Alexios. With a bit of guessing about Latex packages I got the appendix directory installed and the R code runs. (Mostly - The first 3 plots are created. I've been waiting for about 20 minutes for the quantile plot to finish but no results on that one yet. Anyway, it works well enough for me to go a bit deeper now. Cheers, Mark
On Tue, May 27, 2014 at 2:08 PM, alexios ghalanos <alexios at 4dscape.com> wrote:
Hi Mark, 1. Have a look at the "install_bitbucket" documentation. There is the option I believe to pass some extra arguments to "install" via '...'. Specifically the "dependencies" (logical) and "build_vignettes" arguments. 2. You need to have the "appendix" package in your latex installation (see the documentation of your linux flavor on how to do this). 3. fftw on CRAN builds ok for everything but OSX Mavericks...I may remove it going forward and use the base implementation to avoid too many problematic dependencies, but would welcome any feedback on speed comparisons. Best, Alexios On 27/05/2014 21:43, Mark Knecht wrote:
On Tue, May 27, 2014 at 12:59 PM, alexios ghalanos <alexios at 4dscape.com> wrote:
Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
Thanks Alexios. I started reading that based on Pierre's response but I'm hung up: 1) I needed the fftw package to install but it wouldn't as it was not finding fftw3. I then found fftw-3.3.3-r2 in Gentoo portage and think I got past that problem. 2) I'm now just trying to install all the packages shown on yor r-downloads page but rmgarch won't install apparently due to (I think) Latex issues. I got as far as failing due to something called texi2dvi which I found and installed from portage again, but now I have this problem due to a missing appendix.sty file I think. Thanks for any pointers into what I'm doing wrong here. Cheers, Mark R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(devtools)
Loading required package: devtools
Attaching package: ?devtools?
The following objects are masked from ?package:utils?:
?, help
The following object is masked from ?package:base?:
system.file
install_bitbucket("rmgarch","alexiosg")
Installing bitbucket repo(s) rmgarch/master from alexiosg Downloading master.zip from https://bitbucket.org/alexiosg/rmgarch/get/master.zip Installing package from /tmp/Rtmpwt0Tnh/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rmgarch '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925/DESCRIPTION' ... OK * preparing 'rmgarch': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_rmgarch_models.tex' failed. LaTeX errors: ! LaTeX Error: File `appendix.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.9 \usepackage [round]{natbib}^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: <Anonymous> -> texi2pdf -> texi2dvi Execution halted Error: Command failed (1)
Hi Mark, You are probably using the nig or ghyp distributions which do not have a closed form quantile function so it is evaluating it for every point (which is expensive!). Try the jsu distribution instead...it is very flexible and fast to evaluate. Best, Alexios
On 28 May 2014, at 16:13, Mark Knecht <markknecht at gmail.com> wrote: Thanks Alexios. With a bit of guessing about Latex packages I got the appendix directory installed and the R code runs. (Mostly - The first 3 plots are created. I've been waiting for about 20 minutes for the quantile plot to finish but no results on that one yet. Anyway, it works well enough for me to go a bit deeper now. Cheers, Mark
On Tue, May 27, 2014 at 2:08 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Hi Mark, 1. Have a look at the "install_bitbucket" documentation. There is the option I believe to pass some extra arguments to "install" via '...'. Specifically the "dependencies" (logical) and "build_vignettes" arguments. 2. You need to have the "appendix" package in your latex installation (see the documentation of your linux flavor on how to do this). 3. fftw on CRAN builds ok for everything but OSX Mavericks...I may remove it going forward and use the base implementation to avoid too many problematic dependencies, but would welcome any feedback on speed comparisons. Best, Alexios
On 27/05/2014 21:43, Mark Knecht wrote:
On Tue, May 27, 2014 at 12:59 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
Thanks Alexios. I started reading that based on Pierre's response but I'm hung up: 1) I needed the fftw package to install but it wouldn't as it was not finding fftw3. I then found fftw-3.3.3-r2 in Gentoo portage and think I got past that problem. 2) I'm now just trying to install all the packages shown on yor r-downloads page but rmgarch won't install apparently due to (I think) Latex issues. I got as far as failing due to something called texi2dvi which I found and installed from portage again, but now I have this problem due to a missing appendix.sty file I think. Thanks for any pointers into what I'm doing wrong here. Cheers, Mark R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(devtools)
Loading required package: devtools Attaching package: ?devtools? The following objects are masked from ?package:utils?: ?, help The following object is masked from ?package:base?: system.file
install_bitbucket("rmgarch","alexiosg")
Installing bitbucket repo(s) rmgarch/master from alexiosg Downloading master.zip from https://bitbucket.org/alexiosg/rmgarch/get/master.zip Installing package from /tmp/Rtmpwt0Tnh/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rmgarch '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925/DESCRIPTION' ... OK * preparing 'rmgarch': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_rmgarch_models.tex' failed. LaTeX errors: ! LaTeX Error: File `appendix.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.9 \usepackage [round]{natbib}^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: <Anonymous> -> texi2pdf -> texi2dvi Execution halted Error: Command failed (1)
Thanks Alexios. "jsu" returns a solution quickly. The sigma and quantile plots appear to be pretty much identical to what was in your paper. The skewness and kertosis plots do look somewhat different but I expect that's probably cause by using this different model. Anyway, the code as supplied in the paper works fine now. The last issue is not overly important but twinkle didn't install due to (I think) some missing color definitions in Latex. I'll need to see if I can find some info on fixing that but the hard stuff appears to be working. Cheers, Mark Installing twinkle '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmp5b80e3/devtools9e055940c74/alexiosg-twinkle-9461ed2d91a9' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmp5b80e3/devtools9e055940c74/alexiosg-twinkle-9461ed2d91a9/DESCRIPTION' ... OK * preparing 'twinkle': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_Twinkle_Package.tex' failed. LaTeX errors: ! LaTeX Error: Undefined color `violet'. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help. ... ! LaTeX Error: Undefined color `violet'.
On Wed, May 28, 2014 at 10:10 AM, Alexios Ghalanos <alexios at 4dscape.com> wrote:
Hi Mark, You are probably using the nig or ghyp distributions which do not have a closed form quantile function so it is evaluating it for every point (which is expensive!). Try the jsu distribution instead...it is very flexible and fast to evaluate. Best, Alexios
On 28 May 2014, at 16:13, Mark Knecht <markknecht at gmail.com> wrote: Thanks Alexios. With a bit of guessing about Latex packages I got the appendix directory installed and the R code runs. (Mostly - The first 3 plots are created. I've been waiting for about 20 minutes for the quantile plot to finish but no results on that one yet. Anyway, it works well enough for me to go a bit deeper now. Cheers, Mark
On Tue, May 27, 2014 at 2:08 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Hi Mark, 1. Have a look at the "install_bitbucket" documentation. There is the option I believe to pass some extra arguments to "install" via '...'. Specifically the "dependencies" (logical) and "build_vignettes" arguments. 2. You need to have the "appendix" package in your latex installation (see the documentation of your linux flavor on how to do this). 3. fftw on CRAN builds ok for everything but OSX Mavericks...I may remove it going forward and use the base implementation to avoid too many problematic dependencies, but would welcome any feedback on speed comparisons. Best, Alexios
On 27/05/2014 21:43, Mark Knecht wrote:
On Tue, May 27, 2014 at 12:59 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
Thanks Alexios. I started reading that based on Pierre's response but I'm hung up: 1) I needed the fftw package to install but it wouldn't as it was not finding fftw3. I then found fftw-3.3.3-r2 in Gentoo portage and think I got past that problem. 2) I'm now just trying to install all the packages shown on yor r-downloads page but rmgarch won't install apparently due to (I think) Latex issues. I got as far as failing due to something called texi2dvi which I found and installed from portage again, but now I have this problem due to a missing appendix.sty file I think. Thanks for any pointers into what I'm doing wrong here. Cheers, Mark R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(devtools)
Loading required package: devtools Attaching package: ?devtools? The following objects are masked from ?package:utils?: ?, help The following object is masked from ?package:base?: system.file
install_bitbucket("rmgarch","alexiosg")
Installing bitbucket repo(s) rmgarch/master from alexiosg Downloading master.zip from https://bitbucket.org/alexiosg/rmgarch/get/master.zip Installing package from /tmp/Rtmpwt0Tnh/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rmgarch '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925/DESCRIPTION' ... OK * preparing 'rmgarch': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_rmgarch_models.tex' failed. LaTeX errors: ! LaTeX Error: File `appendix.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.9 \usepackage [round]{natbib}^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: <Anonymous> -> texi2pdf -> texi2dvi Execution halted Error: Command failed (1)
Mark, Have you tried passing ?build_vignettes=FALSE? to install_bitbucket? Else I think violet comes from the xcolor package. Alexios
On 28 May 2014, at 18:35, Mark Knecht <markknecht at gmail.com> wrote:
Thanks Alexios. "jsu" returns a solution quickly. The sigma and quantile plots appear to be pretty much identical to what was in your paper. The skewness and kertosis plots do look somewhat different but I expect that's probably cause by using this different model. Anyway, the code as supplied in the paper works fine now. The last issue is not overly important but twinkle didn't install due to (I think) some missing color definitions in Latex. I'll need to see if I can find some info on fixing that but the hard stuff appears to be working. Cheers, Mark Installing twinkle '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmp5b80e3/devtools9e055940c74/alexiosg-twinkle-9461ed2d91a9' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmp5b80e3/devtools9e055940c74/alexiosg-twinkle-9461ed2d91a9/DESCRIPTION' ... OK * preparing 'twinkle': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_Twinkle_Package.tex' failed. LaTeX errors: ! LaTeX Error: Undefined color `violet'. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help. ... ! LaTeX Error: Undefined color `violet'. On Wed, May 28, 2014 at 10:10 AM, Alexios Ghalanos <alexios at 4dscape.com> wrote:
Hi Mark, You are probably using the nig or ghyp distributions which do not have a closed form quantile function so it is evaluating it for every point (which is expensive!). Try the jsu distribution instead...it is very flexible and fast to evaluate. Best, Alexios
On 28 May 2014, at 16:13, Mark Knecht <markknecht at gmail.com> wrote: Thanks Alexios. With a bit of guessing about Latex packages I got the appendix directory installed and the R code runs. (Mostly - The first 3 plots are created. I've been waiting for about 20 minutes for the quantile plot to finish but no results on that one yet. Anyway, it works well enough for me to go a bit deeper now. Cheers, Mark
On Tue, May 27, 2014 at 2:08 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Hi Mark, 1. Have a look at the "install_bitbucket" documentation. There is the option I believe to pass some extra arguments to "install" via '...'. Specifically the "dependencies" (logical) and "build_vignettes" arguments. 2. You need to have the "appendix" package in your latex installation (see the documentation of your linux flavor on how to do this). 3. fftw on CRAN builds ok for everything but OSX Mavericks...I may remove it going forward and use the base implementation to avoid too many problematic dependencies, but would welcome any feedback on speed comparisons. Best, Alexios
On 27/05/2014 21:43, Mark Knecht wrote:
On Tue, May 27, 2014 at 12:59 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
Thanks Alexios. I started reading that based on Pierre's response but I'm hung up: 1) I needed the fftw package to install but it wouldn't as it was not finding fftw3. I then found fftw-3.3.3-r2 in Gentoo portage and think I got past that problem. 2) I'm now just trying to install all the packages shown on yor r-downloads page but rmgarch won't install apparently due to (I think) Latex issues. I got as far as failing due to something called texi2dvi which I found and installed from portage again, but now I have this problem due to a missing appendix.sty file I think. Thanks for any pointers into what I'm doing wrong here. Cheers, Mark R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(devtools)
Loading required package: devtools Attaching package: ?devtools? The following objects are masked from ?package:utils?: ?, help The following object is masked from ?package:base?: system.file
install_bitbucket("rmgarch","alexiosg")
Installing bitbucket repo(s) rmgarch/master from alexiosg Downloading master.zip from https://bitbucket.org/alexiosg/rmgarch/get/master.zip Installing package from /tmp/Rtmpwt0Tnh/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rmgarch '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925/DESCRIPTION' ... OK * preparing 'rmgarch': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_rmgarch_models.tex' failed. LaTeX errors: ! LaTeX Error: File `appendix.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.9 \usepackage [round]{natbib}^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: <Anonymous> -> texi2pdf -> texi2dvi Execution halted Error: Command failed (1)
Alexios, build_vignettes=FALSE allows twinkle to install without error. xcolor was already installed but it appears to put stuff in a slightly different latex path: /usr/share/texmf-site/tex/latex/xcolor/xcolor.sty vs /usr/share/texmf-dist/tex/latex/appendix/appendix.sty I know nothing about latex at all and this is using much more of your time than I intended so I'm not sure we should go much further at this point but if there's something here to fix I'm happy to help. Cheers, Mark mark at c2RAID6 ~ $ equery files xcolor * Searching for xcolor ... * Contents of dev-tex/xcolor-2.11: /usr /usr/share /usr/share/doc /usr/share/doc/xcolor-2.11 /usr/share/doc/xcolor-2.11/ChangeLog.bz2 /usr/share/doc/xcolor-2.11/README.bz2 /usr/share/doc/xcolor-2.11/xcolor.pdf /usr/share/doc/xcolor-2.11/xcolor1.dvi /usr/share/doc/xcolor-2.11/xcolor2.pdf /usr/share/doc/xcolor-2.11/xcolor3.dvi /usr/share/doc/xcolor-2.11/xcolor4.dvi /usr/share/texmf-site /usr/share/texmf-site/doc /usr/share/texmf-site/doc/latex /usr/share/texmf-site/doc/latex/xcolor /usr/share/texmf-site/doc/latex/xcolor/xcolor.pdf -> /usr/share/doc/xcolor-2.11/xcolor.pdf /usr/share/texmf-site/doc/latex/xcolor/xcolor1.dvi -> /usr/share/doc/xcolor-2.11/xcolor1.dvi /usr/share/texmf-site/doc/latex/xcolor/xcolor2.pdf -> /usr/share/doc/xcolor-2.11/xcolor2.pdf /usr/share/texmf-site/doc/latex/xcolor/xcolor3.dvi -> /usr/share/doc/xcolor-2.11/xcolor3.dvi /usr/share/texmf-site/doc/latex/xcolor/xcolor4.dvi -> /usr/share/doc/xcolor-2.11/xcolor4.dvi /usr/share/texmf-site/tex /usr/share/texmf-site/tex/latex /usr/share/texmf-site/tex/latex/xcolor /usr/share/texmf-site/tex/latex/xcolor/svgnam.def /usr/share/texmf-site/tex/latex/xcolor/x11nam.def /usr/share/texmf-site/tex/latex/xcolor/xcolor.sty mark at c2RAID6 ~ $ locate appendix.sty /usr/share/texmf-dist/tex/latex/appendix/appendix.sty /usr/share/texmf-dist/tex/latex/interfaces/interfaces-appendix.sty /usr/share/texmf-dist/tex/latex/ltxmisc/thrmappendix.sty mark at c2RAID6 ~ $
On Wed, May 28, 2014 at 11:01 AM, alexios ghalanos <alexios at 4dscape.com> wrote:
Mark, Have you tried passing ?build_vignettes=FALSE? to install_bitbucket? Else I think violet comes from the xcolor package. Alexios On 28 May 2014, at 18:35, Mark Knecht <markknecht at gmail.com> wrote:
Thanks Alexios. "jsu" returns a solution quickly. The sigma and quantile plots appear to be pretty much identical to what was in your paper. The skewness and kertosis plots do look somewhat different but I expect that's probably cause by using this different model. Anyway, the code as supplied in the paper works fine now. The last issue is not overly important but twinkle didn't install due to (I think) some missing color definitions in Latex. I'll need to see if I can find some info on fixing that but the hard stuff appears to be working. Cheers, Mark Installing twinkle '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmp5b80e3/devtools9e055940c74/alexiosg-twinkle-9461ed2d91a9' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmp5b80e3/devtools9e055940c74/alexiosg-twinkle-9461ed2d91a9/DESCRIPTION' ... OK * preparing 'twinkle': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_Twinkle_Package.tex' failed. LaTeX errors: ! LaTeX Error: Undefined color `violet'. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help. ... ! LaTeX Error: Undefined color `violet'. On Wed, May 28, 2014 at 10:10 AM, Alexios Ghalanos <alexios at 4dscape.com> wrote:
Hi Mark, You are probably using the nig or ghyp distributions which do not have a closed form quantile function so it is evaluating it for every point (which is expensive!). Try the jsu distribution instead...it is very flexible and fast to evaluate. Best, Alexios
On 28 May 2014, at 16:13, Mark Knecht <markknecht at gmail.com> wrote: Thanks Alexios. With a bit of guessing about Latex packages I got the appendix directory installed and the R code runs. (Mostly - The first 3 plots are created. I've been waiting for about 20 minutes for the quantile plot to finish but no results on that one yet. Anyway, it works well enough for me to go a bit deeper now. Cheers, Mark
On Tue, May 27, 2014 at 2:08 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Hi Mark, 1. Have a look at the "install_bitbucket" documentation. There is the option I believe to pass some extra arguments to "install" via '...'. Specifically the "dependencies" (logical) and "build_vignettes" arguments. 2. You need to have the "appendix" package in your latex installation (see the documentation of your linux flavor on how to do this). 3. fftw on CRAN builds ok for everything but OSX Mavericks...I may remove it going forward and use the base implementation to avoid too many problematic dependencies, but would welcome any feedback on speed comparisons. Best, Alexios
On 27/05/2014 21:43, Mark Knecht wrote:
On Tue, May 27, 2014 at 12:59 PM, alexios ghalanos <alexios at 4dscape.com> wrote: Since 2013 the development repository for my packages has moved (a couple of time). See: http://www.unstarched.net/r-downloads/ for latest details. -Alexios
Thanks Alexios. I started reading that based on Pierre's response but I'm hung up: 1) I needed the fftw package to install but it wouldn't as it was not finding fftw3. I then found fftw-3.3.3-r2 in Gentoo portage and think I got past that problem. 2) I'm now just trying to install all the packages shown on yor r-downloads page but rmgarch won't install apparently due to (I think) Latex issues. I got as far as failing due to something called texi2dvi which I found and installed from portage again, but now I have this problem due to a missing appendix.sty file I think. Thanks for any pointers into what I'm doing wrong here. Cheers, Mark R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(devtools)
Loading required package: devtools Attaching package: ?devtools? The following objects are masked from ?package:utils?: ?, help The following object is masked from ?package:base?: system.file
install_bitbucket("rmgarch","alexiosg")
Installing bitbucket repo(s) rmgarch/master from alexiosg Downloading master.zip from https://bitbucket.org/alexiosg/rmgarch/get/master.zip Installing package from /tmp/Rtmpwt0Tnh/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rmgarch '/usr/lib64/R/bin/R' --vanilla CMD build '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925' \ --no-manual --no-resave-data * checking for file '/tmp/Rtmpwt0Tnh/devtools2a9e1a643c4a/alexiosg-rmgarch-d012deb54925/DESCRIPTION' ... OK * preparing 'rmgarch': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'The_rmgarch_models.tex' failed. LaTeX errors: ! LaTeX Error: File `appendix.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.9 \usepackage [round]{natbib}^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: <Anonymous> -> texi2pdf -> texi2dvi Execution halted Error: Command failed (1)