new version of pegas

Dear all,

A new version of pegas is under preparation. It includes several new 
functions for LD mapping, a new na.omit function to check for missing 
alleles, improved code for VCF files and for extracting haplotypes from 
"loci" objects. The list of these new features can be found on GitHub:

https://github.com/emmanuelparadis/pegas/blob/master/pegas/NEWS

A testing version is available (0.8-2.7) from GitHub and from ape's site 
where a Windows version is also available:

http://ape-package.ird.fr/ape_installation.html#versions

Tests and feedback wecome!

Best,

Emmanuel