R-sig-genetics Digest, Vol 33, Issue 4

Hello,
Large data set ? 
I tried the same command and it took me three days to finish it (using a Mac with 32 GB of RAM)
On Aug 31, 2016, at 6:00 AM, r-sig-genetics-request at r-project.org wrote:

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Today's Topics:

  1. Query regarding DAPC using ADEGENT in R (Bhuller, Ravneet)

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Message: 1
Date: Wed, 31 Aug 2016 09:39:18 +0000
From: "Bhuller, Ravneet" <ravneet.bhuller13 at imperial.ac.uk>
To: "r-sig-genetics at r-project.org" <r-sig-genetics at r-project.org>
Subject: [R-sig-genetics] Query regarding DAPC using ADEGENT in R
Message-ID: <F587D8F2-14BA-40CF-A6AD-D9272C7D29BF at ic.ac.uk>
Content-Type: text/plain; charset="UTF-8"

Dear All,

I am trying to do DAPC on my genind object (app) using ADEGENET in R. But when I run the following command:

grp <- find.clusters(app)

it is processing continuously for more than 2 hours but not producing any output. Any guidance will be very much appreciated.

Regards,

Rav

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End of R-sig-genetics Digest, Vol 33, Issue 4
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