Hi Rav, if you have multiple cores on your CPU you can distribute the task among them, which really speeds it up. That might at least let you see whether it is a problem with the dataset. grp <-find.clusters(app, max.n.clust=n, parallel = "multicore", ncpus = 4) You might need to install the Parallel package Cheers R. Graham Reynolds, Ph.D. Assistant Professor of Biology University of North Carolina Asheville www.caribbeanboas.org *From:* R-sig-genetics <r-sig-genetics-bounces at r-project.org> on behalf of Bhuller, Ravneet <ravneet.bhuller13 at imperial.ac.uk>
*Sent:* Wednesday, August 31, 2016 5:39 AM
*To:* r-sig-genetics at r-project.org
*Subject:* [R-sig-genetics] Query regarding DAPC using ADEGENT in R
Dear All,
I am trying to do DAPC on my genind object (app) using ADEGENET in R. But
when I run the following command:
grp <- find.clusters(app)
it is processing continuously for more than 2 hours but not producing any
output. Any guidance will be very much appreciated.
Regards,
Rav
[[alternative HTML version deleted]]
_______________________________________________ R-sig-genetics mailing list R-sig-genetics at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-genetics R-sig-genetics Info Page - stat.ethz.ch <https://stat.ethz.ch/mailman/listinfo/r-sig-genetics> stat.ethz.ch The R-sig-genetics mailing list is devoted to friendly, insightful, exciting discussions on genetic data analysis using the R software. Covered topics include: