Dear all, (sorry about the double-posting) the new release of adegenet, 2.0.0, has hit the CRAN! This is a major release with some breaking of backward compatibility, but it is all for the greater good. You can find a list of the main changes in the ChangeLog: http://cran.r-project.org/web/packages/adegenet/ChangeLog Amongst other things, here are some highlights: - genind objects now allow different individuals to have different ploidy - Zhian Kamvar has implemented hierarchical structure in genind and genlight objects - the generic label system has been removed - handling genind objects is now a lot easier and more powerful - a bunch of new accessors to make your life easier - better integration with hierfstat, pegas, and other packages All of this is documented in tutorials. The main ones will be the basics, taking you through data structure, handling etc: https://github.com/thibautjombart/adegenet/blob/master/tutorials/tutorial-basics.pdf and the one on strata: https://github.com/thibautjombart/adegenet/blob/master/tutorials/tutorial-strata.pdf We are slowly moving the old website onto github. As of now, this is where you should be finding the most up-to-date infos: https://github.com/thibautjombart/adegenet/wiki Many thanks to the whole team (especially Zhian Kamvar and Roman Lustrik) for the last push to get this on CRAN. All the best Thibaut
adegenet 2.0.0 on CRAN!
1 message · Jombart, Thibaut