Segmentation fault

The OS was part of my initial post:

sessionInfo()

R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS


But nevermind, I'll stop posting here.

Thanks

El mar., 29 oct. 2019 09:21, Roger Bivand <Roger.Bivand at nhh.no> escribi?:

On Tue, 29 Oct 2019, Eduardo Diez wrote:

Roger,
Yes sorry about the confusion. Domino is a company (dominodatalab.com)

that

offers a an environment for data science. It's based on docker images. On
one of those images I installed sf and lwgeom. What information should I
get from the image that helps identify the source of the problem?

What OS is the docker image running; where do they get the image? Please
do raise this as an issue, this is not the best channel for this, and
nobody else uses this image I guess. The problem is most likely that the
image does not have the necessary underlying external requirements set up
correctly.

Roger

Thanks,
Best

El mar., 29 oct. 2019 05:54, Roger Bivand <Roger.Bivand at nhh.no>

escribi?:

On Mon, 28 Oct 2019, Eduardo Diez wrote:

Hi everyone.
I'm having problems running spatial processes in a domino machine. I

Please raise an issue on https://github.com/r-spatial/sf/issues, giving
much more detail about your installation (domino is unknown to everybody
but yourself, duckduckgo says: "Domino Machine manufactures blow out
preventers, stuffing boxes, and API products"). Likely cause - failed
installation of lwgeom, or multiple installs of external software. Avoid
posting HTML.

Roger

created a new environment with updated spatial packages but I'm unable

to

run simple tasks. Below an example and some information:

library(sf)Linking to GEOS 3.6.2, GDAL 2.4.2, PROJ 4.9.3>

sessionInfo()

R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3

locale:
[1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8       LC_NAME=C
[9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] sf_0.8-0

loaded via a namespace (and not attached):
[1] compiler_3.6.1     magrittr_1.5       class_7.3-15

 tools_3.6.1

[5] DBI_1.0.0          units_0.6-5        Rcpp_1.0.2

 KernSmooth_2.23-16

[9] grid_3.6.1         e1071_1.7-2        classInt_0.4-2

sf_extSoftVersion()

         GEOS           GDAL         proj.4 GDAL_with_GEOS

 USE_PROJ_H

      "3.6.2"        "2.4.2"        "4.9.3"         "true"

"false"

nc = st_read(system.file("shape/nc.shp", package="sf"))

Reading layer `nc' from data source
`/usr/local/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI
Shapefile'
Simple feature collection with 100 features and 14 fields
geometry type:  MULTIPOLYGON
dimension:      XY
bbox:           xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax:

36.58965

epsg (SRID):    4267
proj4string:    +proj=longlat +datum=NAD27 +no_defs

asd <- st_area(nc[1,]) # area from long/lat

*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: CPL_crs_parameters(x$proj4string)
2: structure(CPL_crs_parameters(x$proj4string), names =
c("SemiMajor",     "SemiMinor", "InvFlattening", "units_gdal",
"IsVertical",     "WktPretty", "Wkt"))
3: crs_parameters(crs) 4: st_crs.sfc(st_geometry(x), parameters = TRUE)
5: st_crs(st_geometry(x), parameters = TRUE)
6: lwgeom::st_geod_area(x)
7: st_area.sfc(st_geometry(x, ...))
8: st_area(st_geometry(x, ...))
9: st_area.sf(nc[1, ])
10: st_area(nc[1, ])
An irrecoverable exception occurred. R is aborting now ...Segmentation
fault (core dumped)


Thanks in advance

Best,

Edu

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--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: Roger.Bivand at nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en

      [[alternative HTML version deleted]]

--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: Roger.Bivand at nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en

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