kernelbb and extent
Hi again, If specifying a larger grid (grid=400) giving cellsize= 187 (instead of cellsize=2000), the difference described below remain but will be much smaller and possibly negligible, so I guess my problem is solved. (I somewhat also mixed grid with cell.size when reading the instructions). Cheers, Anna
On Jun 7, 2012, at 21:20 , Anna Skarin wrote:
Dear All, I'm struggling with the kernelbb in adehabitatHR. I'm calculating the Brownian Brigdes Home Range (BBHR) for reindeer using GPS-data from a number of reindeers. However when I'm using the kernelbb() I get somewhat different results depending on the number of burst included in the ltraj used in the kernelbb, even though I state the same grid size and extent. So is there a bug here or I'm doing things the wrong way, or thinking the wrong way? The function seems to fit the HR to the extent of the total data and not to the single burst, even though the same extent is defined in the function. All the best, Anna Skarin (Sorry for any double posting) Here is my script and please download example data from: https://www.box.com/s/af1a8eeb9b33a26b09ce ltraj4 ltraj1 <- ltraj4[c(1)] sig2 <-10 renLiker <- liker(ltraj4, sig2, byburst=TRUE, rangesig1=c(0,20), plotit=F) renMedian <- median(sapply(renLiker, function(x) x$sig1)) #Here I use the same sig1 in all estimations for comparison ren1<-kernelbb(ltraj1, sig1=renMedian, sig2, byburst=TRUE, grid=50, extent=0.5) ren4<-kernelbb(ltraj4, sig1=renMedian, sig2, byburst=TRUE, grid=50, extent=0.5) #compare this plot with.... plot(ltraj1, spixdf=ren1) #...this plot! shouldn't they be similar? spren4 <- estUDm2spixdf(ren4) plot(ltraj4[c(1)], spixdf=spren4) #or compare these plots and data... plot(getverticeshr(ren1, 99), lwd=2) plot(getverticeshr(ren4$r_RG_08_079, 99),add=TRUE, lwd=2) ren1vol <-getvolumeUD(ren1) summary(ren1vol) ren4vol <-getvolumeUD(ren4) summary(ren4vol$r_RG_08_079) _______________________________________________ R-sig-Geo mailing list R-sig-Geo at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo Anna Skarin, Forskarassistent Dr. Sveriges lantbruksuniversitet Swedish University of Agricultural Sciences Institutionen f?r husdjurens utfodring och v?rd Avdelningen f?r Rensk?tsel Box 7024, 750 07 Uppsala Bes?ksadress: Almas all? 8D Telefon: 018/67 19 54, mobil: 070-588 28 14 Anna.Skarin at slu.se<mailto:Margareta.Norinder at slu.se>, www.slu.se<http://www.slu.se/> [cid:image001.png at 01CCE0BA.74D31070] -------------- next part -------------- An HTML attachment was scrubbed... URL: <https://stat.ethz.ch/pipermail/r-sig-geo/attachments/20120608/84aca500/attachment.html> -------------- next part -------------- A non-text attachment was scrubbed... Name: image001.png Type: image/png Size: 4047 bytes Desc: image001.png URL: <https://stat.ethz.ch/pipermail/r-sig-geo/attachments/20120608/84aca500/attachment.png>