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calculating join count expectation and variance when edge effect are of interest?

On Mon, 13 May 2013, Seth Myers wrote:

            
Interesting question! My feeling would be that your shortest route to a 
resolution is to use Monte Carlo simulation instead of analytical 
variances.

However, you may need to work out how to model the actual memory process 
over time, which would lead to a parametric bootstrap, or possibly a 
Bayesian model.

This feels somewhat like state-space modelling, where you are interested 
in the probability of a raster cell changing category, conditional on its 
neighbours' status and change history. There was a JSS special number on 
state space modelling recently (but I may be barking up the wrong tree!).

Hope this helps,

Roger