readRAST6: too many open files
On Tue, 5 May 2009, Agustin Lobo wrote:
Here it is: R version 2.9.0 (2009-04-17) i486-pc-linux-gnu locale: LC_CTYPE=es_ES.UTF-8;LC_NUMERIC=C;LC_TIME=es_ES.UTF-8;LC_COLLATE=es_ES.UTF-8;LC_MONETARY=C;LC_MESSAGES=es_ES.UTF-8;LC_PAPER=es_ES.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=es_ES.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] spgrass6_0.6-4 XML_1.95-3 rgdal_0.6-7 sp_0.9-34 loaded via a namespace (and not attached): [1] grid_2.9.0 lattice_0.17-22 We are upgrading to match your versions, will retry and let you know
Is it possible that this only happens with the default plugin=NULL argument to readRAST6(), and you have a GRASS GDAL plugin, so it gets auto-found and used? Does it still happen when plugin=FALSE? Roger
Agus Roger Bivand wrote:
On Tue, 5 May 2009, Agustin Lobo wrote:
We're using
rastdum <- readRAST6("nomdum",cat=F,ignore.stderr = T)
(on a ubuntu 8.10 machine and R 2.9)
within a for() loop of hundreds of iterations.
At some point (ca. 199) we get an error
"Too many open files"
and suspect that this is because readRAST6() is opening
and not closing files. Is this a bug?
Possibly, but a complete sessionInfo() would be necessary - the versions of the packages involved may matter. Does this reproduce with readRAST6() in a loop reading say the same raster? I've run 300 reads of spearfish elevation.dem without seeing problems for:
sessionInfo()
R version 2.9.0 (2009-04-17) i386-pc-mingw32 locale: LC_COLLATE=Norwegian (Bokm?l)_Norway.1252;LC_CTYPE=Norwegian (Bokm?l)_Norway.1252;LC_MONETARY=Norwegian (Bokm?l)_Norway.1252;LC_NUMERIC=C;LC_TIME=Norwegian (Bokm?l)_Norway.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] spgrass6_0.6-5 XML_2.3-0 rgdal_0.6-8 sp_0.9-36 loaded via a namespace (and not attached): [1] grid_2.9.0 lattice_0.17-22 Roger
I remember having a similar problem with writeGDAL() on a win machine a long ago, but that problem was fixed. Thanks Agus
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Roger Bivand Economic Geography Section, Department of Economics, Norwegian School of Economics and Business Administration, Helleveien 30, N-5045 Bergen, Norway. voice: +47 55 95 93 55; fax +47 55 95 95 43 e-mail: Roger.Bivand at nhh.no