rgdal 1.5-8 released on CRAN
And not desiring to muddy Thiago's clear waters, but when is Proj7* transition expected? Chris On Fri, May 29, 2020 at 5:46 PM Roy Mendelssohn - NOAA Federal via
R-sig-Geo <r-sig-geo at r-project.org> wrote:
I just tried using the Anaconda setup Mine dies on not being able to find ?projects.h?.
inverser.c:5:10: fatal error: 'projects.h' file not found
#include <projects.h>
^~~~~~~~~~~~
Doing internet searches, for PROJ6 and beyond, this was made private, and is not suppose to be for public linking, see: https://github.com/OSGeo/PROJ/issues/835 < https://github.com/OSGeo/PROJ/issues/835> https://code.mpimet.mpg.de/boards/1/topics/1184 < https://code.mpimet.mpg.de/boards/1/topics/1184> The discussion in the second one suggests that it should be linking to the public header proj_api.h rather than the private header projects.h. proj_api.h does exist in the installation I have. Unless there is an easy fix I can do, more than I want to mess with. -Roy
On May 29, 2020, at 2:25 PM, Thiago V. dos Santos via R-sig-Geo <
r-sig-geo at r-project.org> wrote:
Dear Roger, Many thanks for the effort keeping rgdal up-to-date with proj6. I'd like to report that I am unable to install rgdal 1.5.8 on my macOS
system. I am reporting this error here on the list because I thought it would be the best channel in terms of reaching future users experiencing the same error. Please apologize if my rationale is not right, and ignore this message.
GDAL was installed via MacPorts and is at its latest version, 3.1.0 (at
the time of this writing). Proj6 has also been installed via Macports.
This is how I am trying to install it:
export PKG_CONFIG_PATH=/opt/local/lib/proj6/lib/pkgconfig
R
install.packages('rgdal', type="source", configure.args=c(
'--with-proj-include=/opt/local/lib/proj6/include',
'--with-proj-lib=/opt/local/lib/proj6/lib'))
and this is the output I get:
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
install.packages('rgdal', type="source", configure.args=c(
+ '--with-proj-include=/opt/local/lib/proj6/include',
+ '--with-proj-lib=/opt/local/lib/proj6/lib'))
Installing package into ?/Users/thiago/Documents/R-packages?
(as ?lib? is unspecified)
trying URL '
Content type 'application/x-gzip' length 2299235 bytes (2.2 MB) ================================================== downloaded 2.2 MB * installing *source* package ?rgdal? ... ** package ?rgdal? successfully unpacked and MD5 sums checked ** using staged installation configure: R_HOME: /Library/Frameworks/R.framework/Resources configure: CC: /opt/local/bin/gcc configure: CXX: /opt/local/bin/g++ configure: C++11 support available configure: rgdal: 1.5-8 checking for /usr/bin/svnversion... yes configure: svn revision: 990 checking for gdal-config... /opt/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.1.0 checking GDAL version >= 1.11.4... yes checking GDAL version <= 2.5 or >= 3.0... yes checking gdal: linking with --libs only... yes checking GDAL: gdal-config data directory readable... yes checking GDAL: /opt/local/share/gdal/stateplane.csv readable... yes configure: pkg-config proj exists, will use it configure: PROJ version: 6.3.2 configure: proj CPP flags: -DPROJ_H_API -I/opt/local/lib/proj6/include configure: PROJ LIBS: -L/opt/local/lib/proj6/lib checking PROJ header API:... proj.h checking for gcc... /opt/local/bin/gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /opt/local/bin/gcc accepts -g... yes checking for /opt/local/bin/gcc option to accept ISO C89... none needed checking how to run the C preprocessor... /opt/local/bin/gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking proj.h usability... yes checking proj.h presence... yes checking for proj.h... yes checking for proj_context_create in -lproj... no configure: error: proj_context_create not found in libproj. ERROR: configuration failed for package ?rgdal? * removing ?/Users/thiago/Documents/R-packages/rgdal? * restoring previous ?/Users/thiago/Documents/R-packages/rgdal? The downloaded source packages are in
?/private/var/folders/_z/01gg71zs19g816v6m2dddt8w0000gn/T/RtmpvZAChj/downloaded_packages?
Warning message:
In install.packages("rgdal", type = "source", configure.args =
c("--with-proj-include=/opt/local/lib/proj6/include", :
installation of package ?rgdal? had non-zero exit status I found this error to be quite mysterious, and could not find any
previous discussion about it.
Are you familiar with it? Is there any other argument that I can pass to
install.packages to solve it?
Greetings, -- Thiago V. dos Santos ThiagoDosSantos.com MudancasClimaticasBrasil.com On Thursday, May 28, 2020, 08:53:50 AM GMT-3, Roger Bivand <
roger.bivand at nhh.no> wrote:
With sp 1.4-2 and rgdal 1.5-8, those using GDAL 3 and PROJ 6 (including users of the CRAN Windows binary when it comes) will be part of the big migration to WKT2 from Proj4 strings for CRS representation. See
or for a better rendering of "\phi" and bib-handling:
for background and https://www.r-spatial.org/r/2020/03/17/wkt.html for
the
full sf and sp story. You will see lots of warnings, they should grab your attention, that is what they are for. We need your attention to be as sure as we can be
that
your results - if affected by the transition - have been checked by you. I plan to flip the warnings to default off from rgdal 1.6-*, and sp
1.5-*.
In some weeks but before flipping the defaults, I'll follow up showing ways of muting them, but we really need to be confident that this necessary and future-proofing change isn't silently destroying your work first. So please don't treat the many warnings as just pesky and nagging
-
they are priming your immune system to check for unwanted consequences
of
your legacy CRS representation choices. I'd also like to thank the maintainers of packages importing from/depending on sp/rgdal for largely positive responses to issues
raised
and emails sent, often less polite than they might have been, but
grabbing
attention was more important. From over 70 broken reverse dependency packages we are now well under 20, and I've contacted all of those, with only a couple not responding. Edzer has seen similar responsiveness for the parallel migration of sf. Enjoy! Roger -- Roger Bivand Department of Economics, Norwegian School of Economics, Helleveien 30, N-5045 Bergen, Norway. voice: +47 55 95 93 55; e-mail: Roger.Bivand at nhh.no https://orcid.org/0000-0003-2392-6140 https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
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