MODIS package's runGdal() returns error: dataFormat='GTiff', format not supported
Logging out (Log out?!?, do people still do that?), which is mentioned in the manual, though actually means more than closing and opening a new terminal, actually restarting the kernel, results in system update where after MRT is recognized but still, in my case, drivers are not:
library(MODIS) MODISoptions()
All suggested packages are installed Detecting available write drivers! Found: 64 candidate drivers, detecting file extensions... ERROR 1: --format option given with format 'VRT-raster-', but that format not recognised. Use the --formats option to get a list of available formats, and use the short code (ie. GTiff or HFA) as the format identifier. ERROR 1: --format option given with format 'GTiff-raster-', but that format not recognised. Use the --formats option to get a list of available formats, and use the short code (ie. GTiff or HFA) as the format identifier. 0 usable drivers detected! STORAGE: _______________ localArcPath : /home/chris/MODIS_ARC outDirPath : /home/chris/MODIS_ARC/PROCESSED DOWNLOAD: _______________ MODISserverOrder : LPDAAC, LAADS dlmethod : auto stubbornness : high PROCESSING: _______________ GDAL : GDAL 2.1.0dev, released 2015/99/99 MRT : Version 4.1 (March 2011) pixelSize : asIn outProj : asIn resamplingType : NN dataFormat : GTiff DEPENDENCIES: _______________
So, a little more digging. Chris On Wed, May 18, 2016 at 2:13 PM, chris english <
englishchristophera at gmail.com> wrote:
Hakim, Your installation and mine share the same defect:
MODIS:::checkGdalDriver()
[1] TRUE
MODIS:::checkGdalDriver(GTiff)
Error in correctPath(path) : object 'GTiff' not found
MODIS:::checkGdalDriver
function (path = NULL)
{
inW <- getOption("warn")
on.exit(options(warn = inW))
options(warn = -1)
path <- correctPath(path)
cmd <- paste0(path, "gdalinfo --formats")
if (.Platform$OS == "windows") {
driver <- try(shell(cmd, intern = TRUE), silent = TRUE)
}
else {
driver <- try(system(cmd, intern = TRUE), silent = TRUE)
}
if (class(driver) == "try-error") {
options(warn = inW)
warning("No gdal installation found please install 'gdal' on your
system first!")
return(FALSE)
}
if (length(grep(driver, pattern = "HDF4")) == 0) {
return(FALSE)
}
else {
return(TRUE)
}
}
<bytecode: 0x7ddc970>
<environment: namespace:MODIS>
If we hard code:
cmd <- "/usr/local/bin/gdalinfo --formats" driver <- try(system(cmd, intern = TRUE), silent = TRUE) driver
[1] "Supported Formats:" [2] " VRT -raster- (rw+v): Virtual Raster" [3] " GTiff -raster- (rw+vs): GeoTIFF" [4] " NITF -raster- (rw+vs): National Imagery Transmission Format" [5] " RPFTOC -raster- (rovs): Raster Product Format TOC format" [6] " ECRGTOC -raster- (rovs): ECRG TOC format" [7] " HFA -raster- (rw+v): Erdas Imagine Images (.img)" [8] " SAR_CEOS -raster- (rov): CEOS SAR Image" [9] " CEOS -raster- (rov): CEOS Image" [10] " JAXAPALSAR -raster- (rov): JAXA PALSAR Product Reader (Level 1.1/1.5)" I am still looking for where correctPath() comes from as well as trying to get my MRT recognized, but slowly slowly. Seems we're looking at environment variables (MRT, and likely gdal_config) and some other special sause that we've overlooked in installation of MODIS. Chris On Wed, May 18, 2016 at 8:53 AM, chris english < englishchristophera at gmail.com> wrote:
?MODISoptions
MODIS:::checkTools("GDAL")
Checking availabillity of GDAL: OK, GDAL 2.1.0dev, released 2015/99/99 found!
getOption("MODIS_gdalOutDriver")
[1] name description extension <0 rows> (or 0-length row.names)
Interestingly not finding even GTiff default. Well, more digging, but these outputs explain runGdal error output. On Tue, May 17, 2016 at 10:07 AM, Hakim Abdi <hakim.abdi at nateko.lu.se> wrote:
Same here. Loading rgdal didn't make a difference. On Tue, May 17, 2016 at 9:05 AM, chris english < englishchristophera at gmail.com> wrote:
I suspect it is an incomplete Modis build even though library(Modis) loads without complaint, but will have to check into this later. I recall not seeing MRT complete...which I think is inscribing a folder though is probably much more. Having rgdal loaded as against your sessionInfo() didn't make a difference. Chris On Tue, May 17, 2016 at 9:52 AM, chris english < englishchristophera at gmail.com> wrote:
Hi Hakim, Interesting and unexpected as I am on a linux box but I have the same problem, or I can reproduce your's:
sessionInfo()
R version 3.2.2 (2015-08-14) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.4 LTS locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] rgdal_1.1-3 MODIS_0.10-34 raster_2.5-2 sp_1.2-1 loaded via a namespace (and not attached): [1] rsconnect_0.4.1.11 tools_3.2.2 Rcpp_0.12.4 grid_3.2.2 lattice_0.20-33
dates <- as.POSIXct( as.Date(c("01/01/2010","01/05/2016"),format
="%d/%m/%Y") )
dates <- transDate(dates[1],dates[2])
product <- "MOD13Q1"
bands <- "010"
h = c("21","22")
v = c("07","08")
runGdal(product=product,begin=dates$beginDOY,end =
dates$endDOY,tileH =
+ h,tileV = v, SDSstring = bands, outProj="4326")
Error in runGdal(product = product, begin = dates$beginDOY, end =
dates$endDOY, :
in argument dataFormat='GTiff', format not supported by GDAL type:
'gdalWriteDriver()' (column 'name') to list available inputs
debugonce(runGdal)
#output
Browse[2]> n
debug: stop("in argument dataFormat='", opts$dataFormat, "', format
not supported by GDAL type: 'gdalWriteDriver()' (column 'name') to list
available inputs")
Browse[2]> n
Error in runGdal(product = product, begin = dates$beginDOY, end =
dates$endDOY, :
in argument dataFormat='GTiff', format not supported by GDAL type:
'gdalWriteDriver()' (column 'name') to list available inputs
Hmmmm. More digging. Sorry to not be helpful to this point. Chris On Mon, May 16, 2016 at 11:47 AM, Hakim Abdi <hakim.abdi at nateko.lu.se> wrote:
Hi Alex, The OS is a 64 bit Windows 7 as specified in the sessionInfo() output I posted. When I upgraded QGIS, I did so by uninstalling the previous one and reinstalling the new version. I'm not quite sure what it means to upgrade GDAL since I installed it fresh with OSGeo4W. In R, I reinstall all the packages I need fresh off the repository using the install.views command. gdalDrivers() produces the output that's attached. Cheers, Hakim On Wed, May 11, 2016 at 5:09 PM, Alex Mandel < tech_dev at wildintellect.com> wrote:
What operating system? When you upgraded QGIS did you also upgrade GDAL? When you upgraded R, did you update your packages (or rebuild any packages)? What do you get from the following command? gdalDrivers() Thanks, Alex On 05/02/2016 02:11 PM, Hakim Abdi wrote:
Hello everyone, I'm having problems with the MODIS package, specifically, the
runGdal()
command after the recent update to R 3.2.5. The error I get is
this:
Error in runGdal(product = product, begin = dates$beginDOY, end = dates$endDOY, : in argument dataFormat='GTiff', format not
supported by
GDAL type: 'gdalWriteDriver()' (column 'name') to list available
inputs
I'm not quite sure why this is happening, and I haven't found a
solution
online. Does anyone have an idea? The package was working fine
before I
upgraded R from 3.1.1. to 3.2.5, QGIS from 2.12.3 to 2.14.1 and
RStudio to
version 0.99.467. My details are below, thanks for the assistance: R version 3.2.5 (2016-04-14) -- "Very, Very Secure Dishes" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
require(MODIS)
Loading required package: MODIS Loading required package: raster Loading required package: sp MODIS_manual:
https://ivfl-rio.boku.ac.at/owncloud/public.php?service=files&t=660dc830afb091237cc40b3dea2fdf6b
Attaching package: ?MODIS?
The following object is masked from ?package:base?:
file.size
MODISoptions()
All suggested packages are installed Detecting available write drivers! Found: 64 candidate drivers, detecting file extensions... 0 usable drivers detected! STORAGE:
_______________
localArcPath : C:/Users/Hakim/Documents/MODIS_ARC/
outDirPath : C:/Users/Hakim/Documents/MODIS_ARC/PROCESSED/
DOWNLOAD:
_______________
MODISserverOrder : LPDAAC, LAADS
dlmethod : auto
stubbornness : 5
PROCESSING:
_______________
GDAL : GDAL 2.0.2, released 2016/01/26
MRT : Version 4.1 (March 2011)
pixelSize : asIn
outProj : GEOGRAPHIC
resamplingType : NN
dataFormat : GTiff
DEPENDENCIES:
_______________
dates <- as.POSIXct( as.Date(c("01/01/2010","01/05/2016"),format =
"%d/%m/%Y") )
dates <- transDate(dates[1],dates[2])
product <- "MOD13Q1"
bands <- "010"
h = c("21","22")
v = c("07","08")
*> runGdal(product=product,begin=dates$beginDOY,end =
dates$endDOY,tileH =
h,tileV = v, SDSstring = bands, outProj="4326")* *Error in runGdal(product = product, begin = dates$beginDOY, end = dates$endDOY, : **in argument dataFormat='GTiff', format not
supported by
GDAL type: 'gdalWriteDriver()' (column 'name') to list available
inputs*
sessionInfo()
R version 3.2.5 (2016-04-14) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods
base
other attached packages: [1] MODIS_0.10-34 raster_2.5-2 sp_1.2-3 loaded via a namespace (and not attached): [1] tools_3.2.5 Rcpp_0.12.4 grid_3.2.5 lattice_0.20-33
__________________________________________________
Hakim Abdi | PhD Candidate
Center for Geobiosphere Science
Department of Physical Geography and Ecosystem Science
Lund University, S?lvegatan 12, SE-223 62 Lund, Sweden
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