spgrass6 and R 2.9
Hi First try updating glibc, and install spgrass6 again. If this does not work you could try export MALLOC_CHECK_=0 before you start R. The error might be related to "somewhere something" is trying to free memory that has already been unallocated. I don't know the details here, but it could be worth a try? Best wishes Torleif
On Friday 29 May 2009 11:26:56 pm Dylan Beaudette wrote:
Hi,
Just upgraded to R 2.9.0 this morning, and tried to update all of my
packages. Everyhing seemed to work, except spgrass6. Manually removing the
old packing and installing fresh resulted in:
install.packages('spgrass6', dep=TRUE)
trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/spgrass6_0.6-6.tar.gz'
Content type 'application/x-gzip' length 332298 bytes (324 Kb)
opened URL
==================================================
downloaded 324 Kb
* Installing *source* package 'spgrass6' ...
** R
** inst
** preparing package for lazy loading
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 1.7.0dev, released 2008/11/26
Path to GDAL shared files: /usr/local/share/gdal
Loaded PROJ.4 runtime: Rel. 4.6.0, 21 Dec 2007
Path to PROJ.4 shared files: (autodetected)
** help
*** installing help indices
>>> Building/Updating help pages for package 'spgrass6'
Formats: text html latex example
execGRASS text html latex example
gmeta6 text html latex example
initGRASS text html latex example
readRAST6 text html latex example
readVECT6 text html latex example
spgrass6 text html latex example
** building package indices ...
* DONE (spgrass6)
*** glibc detected *** /usr/local/lib/R/bin/exec/R: double free or
corruption (fasttop): 0x096ac2b0 ***
At this point R stops responding, and I have to issue a `kill -9` to make
regain control of the shell.
Any ideas?
Dylan