cannot install rgdal after updating to fedora32

On Sun, 28 Jun 2020, Roger Bivand wrote:

Vero,

On Sat, 27 Jun 2020, Veronica Andreo wrote:

 See the attached config.log file

How did you install R itself? If an rpm, then

https://github.com/r-spatial/sf/issues/1369

may be relevant, also if you see errors installing sf. You would need to
unset LDFLAGS before installing:

https://github.com/r-spatial/sf/issues/1369#issuecomment-614096865

Please report back on this.

LDFLAGS needs unsetting. Revision 1020 on R-Forge

https://r-forge.r-project.org/R/?group_id=884

includes a new configure argument --disable-loadflags to assist in
unsetting the very specific R rpm LDFLAGS. Please report if this fixes the
problem.

Roger

Roger

 El s?b., 27 jun. 2020 a las 21:29, Veronica Andreo
 (<veroandreo at gmail.com>)
 escribi?:

 Hello everyone

 I have just updated my system to fedora 32 (which fetched GDAL 3 and

PROJ

 6) and when updating my R packages, I get the following error for

rgdal.

 Can someone help me out here? What does it mean that it cannot run C++
 compiled programs?  And do I want to crosscompile?

 Thanks much in advance

 Vero

 ---

 install.packages("rgdal")
 Installing package into
 ?/home/veroandreo/R/x86_64-redhat-linux-gnu-library/3.6?
 (as ?lib? is unspecified)
 trying URL 'http://cran.rstudio.com/src/contrib/rgdal_1.5-12.tar.gz'
 Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
 ==================================================
 downloaded 2.2 MB

 * installing *source* package ?rgdal? ...
 ** package ?rgdal? successfully unpacked and MD5 sums checked
 ** using staged installation
configure:  R_HOME: /usr/lib64/R
configure:  CC: gcc -m64
configure:  CXX: g++ -m64 -std=gnu++11
configure:  CXX11 is: g++ -m64, CXX11STD is: -std=gnu++11
configure:  CXX is: g++ -m64 -std=gnu++11
configure:  C++11 support available
configure:  rgdal: 1.5-12
 checking for /usr/bin/svnversion... yes
configure:  svn revision: 1018
 checking for gdal-config... /usr/bin/gdal-config
 checking gdal-config usability... yes
configure:  GDAL: 3.0.4
 checking GDAL version >= 1.11.4... yes
 checking GDAL version <= 2.5 or >= 3.0... yes
 checking GDAL: linking with --libs only... yes
 checking GDAL: gdal-config data directory readable... yes
 checking GDAL: /usr/share/gdal/stateplane.csv readable... yes
configure:  pkg-config proj exists, will use it
configure:  PROJ version: 6.3.2
configure:  PROJ CPP flags: -DPROJ_H_API
configure:  PROJ LIBS: -lproj
 checking PROJ header API:... yes
 checking whether the C++ compiler works... yes
 checking for C++ compiler default output file name... a.out
 checking for suffix of executables...
 checking whether we are cross compiling... configure: error: in
 `/home/veroandreo/tmp/Rtmpo7AtPr/R.INSTALL12cc66f8f895/rgdal':
configure:  error: cannot run C++ compiled programs. <<<<--- here
 If you meant to cross compile, use `--host'.
 See `config.log' for more details
 ERROR: configuration failed for package ?rgdal?
 * removing

?/home/veroandreo/R/x86_64-redhat-linux-gnu-library/3.6/rgdal?

 * restoring previous
 ?/home/veroandreo/R/x86_64-redhat-linux-gnu-library/3.6/rgdal?
 Warning in install.packages :
   installation of package ?rgdal? had non-zero exit status

 ---

 sessionInfo()
 R version 3.6.3 (2020-02-29)
 Platform: x86_64-redhat-linux-gnu (64-bit)
 Running under: Fedora 32 (Thirty Two)

 Matrix products: default
 BLAS/LAPACK: /usr/lib64/libopenblas-r0.3.9.so

 Random number generation:
  RNG:     Mersenne-Twister
  Normal:  Inversion
  Sample:  Rounding

 locale:
  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
 [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

 attached base packages:
 [1] stats     graphics  grDevices utils     datasets  methods   base

 loaded via a namespace (and not attached):
 [1] compiler_3.6.3 tools_3.6.3

--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: Roger.Bivand at nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en